1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TCCTTCCAGAAAGCAAGTTGTCCTAGTTGGTCATAAATCTTCTGTAGAGTTTGAAGATATGCTTGCTGCTGCTCATGCACAATATGATCCTAACAGAACTgtgagttcaagactcctatctcgagcccatagaactgtctgttctttatcttttctgctaatccatatgtttctcttttgtgctgctaataatgacag
species | Vitis vinifera |
transcript | Vv07s0104g01480.t01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TTGAAGATATGCTTGCTGCTGCTCATGCACAATATGATCCTAACAGAACT GTGATTCACATAGACCCCACCGAAACCGAGCAGATGGAATTTTGGGAAGCAEST: gi|110388462|gb|EC953217.1|EC953217
genomic: TTGAAGATATGCTTGCTGCTGCTCATGCACAATATGATCCTAACAGAACTgtgagttcaa ... ataatgacagGTGATTCACATAGACCCCACCGAAACCGAGCAGATGGAATTTTGGGAAGCA
EST: TTGAAGATATGCTTGCTGCTGCTCATGCACAATATGATCCTAACAGAACT GTGATTCACATAGACCCCACCGAAACCGAGCAGATGGAATTTTGGGAAGCAEST: gi|110370590|gb|EC930089.1|EC930089
genomic: TTGAAGATATGCTTGCTGCTGCTCATGCACAATATGATCCTAACAGAACTgtgagttcaa ... ataatgacagGTGATTCACATAGACCCCACCGAAACCGAGCAGATGGAATTTTGGGAAGCA
EST: TTGAAGATATGCTTGCTGCTGCTCATGCACAATATGATCCTAACAGAACT GTGATTCACATAGACCCCACCGAAACCGAGCAGATGGAATTTTGGGAAGCAEST: gi|110398380|gb|EC964699.1|EC964699
genomic: TTGAAGATATGCTTGCTGCTGCTCATGCACAATATGATCCTAACAGAACTgtgagttcaa ... ataatgacagGTGATTCACATAGACCCCACCGAAACCGAGCAGATGGAATTTTGGGAAGCA
EST: GCACAATATGATCCTAACAGAACT GTGATTCACATAGACCCCACCGAAACCGAGCAGATGGAATTTTGGGAAGCAEST: gi|22015285|gb|BQ800319.1|BQ800319
genomic: GCACAATATGATCCTAACAGAACTgtgagttcaa ... ataatgacagGTGATTCACATAGACCCCACCGAAACCGAGCAGATGGAATTTTGGGAAGCA
EST: TTGAAGATATGCTTGCTGCTGCTCATGCACAATATGATCCTAACAGAACT GTGATTCACATAGACCCCACCGAAACCGAGCAGATGGAATTTTGGGAAGCAEST: gi|110390735|gb|EC955661.1|EC955661
genomic: TTGAAGATATGCTTGCTGCTGCTCATGCACAATATGATCCTAACAGAACTgtgagttcaa ... ataatgacagGTGATTCACATAGACCCCACCGAAACCGAGCAGATGGAATTTTGGGAAGCA
EST: TTGAAGATATGCTTGCTGCTGCTCATGCACAATATGATCCTAACAGAACT GTGATTCACATAGACCCCACCGAAACCGAGCAGATGGAATTTTGGGAAGCA
genomic: TTGAAGATATGCTTGCTGCTGCTCATGCACAATATGATCCTAACAGAACTgtgagttcaa ... ataatgacagGTGATTCACATAGACCCCACCGAAACCGAGCAGATGGAATTTTGGGAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTTCCAGAAAGCAAGTTGTCCTAGTTGGTCATAAATCTTCTGTAGAGTTTGAAGATATGCTTGCTGCTGCTCATGCACAATATGATCCTAACAGAACTgtgagttcaagactcctatctcgagcccatagaactgtctgttctttatcttttctgctaatccatatgtttctcttttgtgctgctaataatgacag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT