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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTTACTTGCAAATCTTGTTGAAGACCAGATTGGAGGTACCAATGGCTATGCTGATTGGATTTTGCAAATACACCGACAAGTACAGCAAAATGCGTGAGgtacaggtaccagtgactgttaatacaatgatatttgtagggtgcattaattatattttaacgcatggtacacataacatgtgaattttggttgaagtaa...

Basic information

species Vitis vinifera
transcript Vv19s0014g01900.t01
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110692387|gb|EE071577.1|EE071577
EST:     TGCTGATTGGATTTTGCAAATACACCGACAAGTACAGCAAAATGCGTGAGGTACAG                    
genomic: TGCTGATTGGATTTTGCAAATACACCGACAAGTACAGCAAAATGCGT---G---AGgtacaggtac ... ttggc
EST: gi|110422124|gb|EC988436.1|EC988436
EST:     TGCTGATTGGATTTTGCAAATACACCGACAAGTACAGCAAAATGCGTGAG                         AAGGTAGCAAGGTGTTAATCATTGGCACACACTGGTTGACAACATTCAGGT
genomic: TGCTGATTGGATTTTGCAAATACACCGACAAGTACAGCAAAATGCGTGAGgtacaggtac ... ttggctgcagCAGGTAGCAAGGTGTTAATCATTGGCACACACTGGTTGACAACATTCAGGT
EST: gi|110694926|gb|EE072359.1|EE072359
EST:     TGCTGATTGGATTTTGCAAATACACCGACAAGTACAGCAAAATGCGTGAG                         --G-TAGCAAGGTGTTAATCATTGGCACACACTGGTTGACAACATTCAGGT
genomic: TGCTGATTGGATTTTGCAAATACACCGACAAGTACAGCAAAATGCGTGAGgtacaggtac ... ttggctgcagCAGGTAGCAAGGTGTTAATCATTGGCACACACTGGTTGACAACATTCAGGT
EST: gi|110695491|gb|EE073572.1|EE073572
EST:     TGCTGATTGGATTTTGCAAATACACCGACAAGTACAGCAAAATGCGTGAG                         CAGGTAGCAAGGTGTTAATCATTGGCACACACTGGTTGACAACATTCAGGT
genomic: TGCTGATTGGATTTTGCAAATACACCGACAAGTACAGCAAAATGCGTGAGgtacaggtac ... ttggctgcagCAGGTAGCAAGGTGTTAATCATTGGCACACACTGGTTGACAACATTCAGGT
EST: gi|110718185|gb|EE094730.1|EE094730
EST:     GCTGATTGGATTTTTGCAA-TACACCGACAAGTACAGCAAAATGCGTGAG                         --G-TAGCAAGGTGTTA-TCATTGGCACACACTGGTTGACA-CATTTCAG-
genomic: GCTGATTGGATTTT-GCAAATACACCGACAAGTACAGCAAAATGCGTGAGgtacaggtac ... ttggctgcagCAGGTAGCAAGGTGTTAATCATTGGCACACACTGGTTGACAACATT-CAGG
EST: gi|33406528|gb|CF212155.1|CF212155
EST:     TGCTGATTGGATTTTGCAAATACACCGACAAGTACAGCAAAATGCGTGAG                         AAGGTAGCAAGGTGTTAATCATTGGCACACACTGGTTGACAACATTCAGGT
genomic: TGCTGATTGGATTTTGCAAATACACCGACAAGTACAGCAAAATGCGTGAGgtacaggtac ... ttggctgcagCAGGTAGCAAGGTGTTAATCATTGGCACACACTGGTTGACAACATTCAGGT
EST: gi|33406608|gb|CF212235.1|CF212235
EST:     TGCTGATTGGATTTTGCAAATACACCGACAAGTACAGCAAAATGCGTGAG                         AAGGTAGCAAGGTGTTAATCATTGGCACACACTGGTTGACAACATTCAGGT
genomic: TGCTGATTGGATTTTGCAAATACACCGACAAGTACAGCAAAATGCGTGAGgtacaggtac ... ttggctgcagCAGGTAGCAAGGTGTTAATCATTGGCACACACTGGTTGACAACATTCAGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTTTACTTGCAAATCTTGTTGAAGACCAGATTGGAGGTACCAATGGCTATGCTGATTGGATTTTGCAAATACACCGACAAGTACAGCAAAATGCGTGAGgtacaggtaccagtgactgttaatacaatgatatttgtagggtgcattaattatattttaacgcatggtacacataacatgtgaattttggttgaagtaa

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