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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAAATGCAATGTGGGCTATGCTTTTGTCAACATGATTGATCCTCTTCATATTGTTCCATTCCATCAGgttagaatccatgcattgtaatataattatacttaatacttttttcggctttcaaaggaaagcttcttgtctacagaatttcataaggtctgcaactgatatggactgagaactgctaatcagaatgtatcatatatttcacag

Basic information

species Vitis vinifera
transcript Vv17s0000g00240.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA08G01040.1 (Glycine max), 5'ss of exon 13
AACAAATGCAATGTGGGCTATGCTTTTGTCAACATGATTGATCCTCTTCATATTGTTCCATTCCATCAGgttagaatccatgcattgtaatataattatacttaa-tacttttttcggctttcaaaggaaagcttcttgtctacagaatttcataaggtctgcaactgatatggactgagaactgctaatcagaatgtatcatatatttcacag
|||||||| ||||| |||||||| ||  | |||||||||||||||  ||| ||| |||| ||||||||||||        || ||| |  |||  ||  |  ||  ||  |  |  |  |||     |    | || |||  |  ||| |  |||| |     || || | || |                                       
AACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCATCAGgttg-----tttggattttcttatgctttgagctatctatgtactatgaatttt----gggttcctcatgttgatggaactaaataaag-----aaatgttttgcag--------------------------------------

upper sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA06G17250.1 (Glycine max), 5'ss of exon 11
----------------------AACAAATGCAATGTGGGCTATGCTTTTGTCAACATGATTGATCCTCTTCATATTGTTCCATTCCATCAGgttagaatccatgcattgtaatataattatacttaatacttttttcggctttcaaaggaaagct--tcttgtctacagaatttcataaggtctgcaactgatatggactgagaactgctaatcagaatgtatcatatatttcacag
                      |||||||| ||||| |||||||| ||  |||| ||||||||||||   || ||| |||||||||| ||||||||     |  | || |   ||| | ||     ||| || | |  | | | ||     || |  |||  |        ||||  |  || |  |      ||  | | || | |  |   |||                     
GCAATTCTACAAATGGTTGCAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGACAAATTATTCCATTCCACCAGgttagttggaaatccttatgtaatactaatttgatataattatctgtgatctgaattctgagttcatctgattctttttgtttctaagagtttatatgcctaata-attaaggaatattgcacag---------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33404602|gb|CF210229.1|CF210229
EST:     ATGCTTTTGTCAACATGATTGATCCTCTTCATATTGTTCCATTCCATCAG                         GCATTCAATGGTAAAAAGTGGGAGAAGTTCAACAGTGAGAAGGTGGCATCT
genomic: ATGCTTTTGTCAACATGATTGATCCTCTTCATATTGTTCCATTCCATCAGgttagaatcc ... tatttcacagGCATTCAATGGTAAAAAGTGGGAGAAGTTCAACAGTGAGAAGGTGGCATCT
EST: gi|110376881|gb|EC941957.1|EC941957
EST:     ATGCTTTTGTCAACATGATTGATCCTCTTCATATTGTTCCATTCCATCAG                         GCATTCAATGGTAAAAAGTGGGAGAAGTTCAACAGTGAGAAGGTGGCATCT
genomic: ATGCTTTTGTCAACATGATTGATCCTCTTCATATTGTTCCATTCCATCAGgttagaatcc ... tatttcacagGCATTCAATGGTAAAAAGTGGGAGAAGTTCAACAGTGAGAAGGTGGCATCT
EST: gi|161716528|gb|FC065225.1|FC065225
EST:     ATGCTTTTGTCAACATGATTGATCCTCTTCATATTGTTCCATTCCATCAG                         GCATTCAATGGTAAAAAGTGGGAGAAGTTCAACAGTGAGAAGGTGGCATCT
genomic: ATGCTTTTGTCAACATGATTGATCCTCTTCATATTGTTCCATTCCATCAGgttagaatcc ... tatttcacagGCATTCAATGGTAAAAAGTGGGAGAAGTTCAACAGTGAGAAGGTGGCATCT