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AACTAGTGCACCAGATCTCATCACATCCAGCAGTACAAAGAGTGGTTGCATTGGGAACACTTTTTGCCCTAGAACTCCAAGCAGAAGGCAGCAATGTTGGgtattatctcattaccttctagtcttttcattgttgaatgttgtattctttgtagtattgtcatagttactcaagagtatcaaatgctgcctggacaatt...
species | Vitis vinifera |
transcript | Vv11s0052g01390.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TTGGGAACACTTTTTGCCCTAGAACTCCAAGCAGAAGGCAGCAATGTTGG GTATGGATCCCTATACGCGAGGTCTCTTCTTCTGAAGCTCCGGGATGATGGEST: gi|122691818|gb|EC983993.1|EC983993
genomic: TTGGGAACACTTTTTGCCCTAGAACTCCAAGCAGAAGGCAGCAATGTTGGgtattatctc ... ttttatgcagGTATGGATCCCTATACGCGAGGTCTCTTCTTCTGAAGCTCCGGGAAGATGG
EST: TTGGGAACACTTTTTGCCCTAGAACTCCAAGCAGAAGGCAGCAATGTTGG GTATGGATCCCTATACGCGAGGTCTCTTCTTCTGAAGCTCCGGGAAGATGGEST: gi|122692196|gb|EC995058.1|EC995058
genomic: TTGGGAACACTTTTTGCCCTAGAACTCCAAGCAGAAGGCAGCAATGTTGGgtattatctc ... ttttatgcagGTATGGATCCCTATACGCGAGGTCTCTTCTTCTGAAGCTCCGGGAAGATGG
EST: TTGGGAACACTTTTTGCCCTAGAACTCCAAGCAGAAGGCAGCAATGTTGG GTATGGATCCCTATACGCGAGGTCTCTTCTTCTGAAGCTCCGGGATGATGG
genomic: TTGGGAACACTTTTTGCCCTAGAACTCCAAGCAGAAGGCAGCAATGTTGGgtattatctc ... ttttatgcagGTATGGATCCCTATACGCGAGGTCTCTTCTTCTGAAGCTCCGGGAAGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTAGTGCACCAGATCTCATCACATCCAGCAGTACAAAGAGTGGTTGCATTGGGAACACTTTTTGCCCTAGAACTCCAAGCAGAAGGCAGCAATGTTGGgtattatctcattaccttctagtcttttcattgttgaatgttgtattctttgtagtattgtcatagttactcaagagtatcaaatgctgcctggacaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagta