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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGAAAAAGAGCCCCCTTCAACACTTATGTGGACTCTGTTTTTATTGGCTCAGgtttttcttctatcacatggatgattagttttctcccatttcctctacactgttctttctgcaactttgtttagggattttatgctggtgcag

Basic information

species Vitis vinifera
transcript Vv09s0002g05110.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA15G01580.1 (Glycine max), 5'ss of exon 13
GGAAGAAAAAGAGCCCCCTTCAACACTTATGTGGACTCTGTTTTTATTGGCTCAGgtttttcttctatcacatggatgattagttttctcccatttcctc-tacactgttctttctgcaactttgtttagggattttatgctggtgcag
|   ||||||||||| |||||||| |||||||||||| |||| || ||||||||||||| |    | |    | ||||||  |||||    |||||  |  |    |  ||  | |     | |  | || || ||| || | ||||||
GATGGAAAAAGAGCCACCTTCAACTCTTATGTGGACTTTGTTCTTGTTGGCTCAGgtttgtgcattttt---tagatgat--gttttgatacatttttttgtgggttcctccatatttttttctactcagtgaatttttgtttgtgcag

upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA07G03850.1 (Glycine max), 5'ss of exon 13
GGAAGAAAAAGAGCCCCCTTCAACACTTATGTGGACTCTGTTTTTATTGGCTCAGgtttttcttctatcacatggatgattagttttctcccatttcctctacactgttctttctgcaactttgtttagggattttatgctggtgcag
|   || ||||| |||||||| || |||||||||||| ||||||||||||||||||||  |   |||| |  || ||  |||| ||     ||||  | |                    |||  | ||  | ||| | |||||||||
GACGGACAAAGAACCCCCTTCTACTCTTATGTGGACTTTGTTTTTATTGGCTCAGgttggtag-ctattatttg-atttttagatt-----cattatccccg------------------tttactaagataatttgtactggtgcag

upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA13G43760.1 (Glycine max), 5'ss of exon 13
GGAAGAAAAAGAGCCCCCTTCAACACTTATGTGGACTCTGTTTTTATTGGCTCAGgtttttcttctatcacatggatgattagttttctcccatt-tcctctacactgttctttctgcaactttgtttagggattttatgctggtgcag
|   ||||||||||| |||||||| |||||||||||| |||| || ||||||||||||| |    |||    | ||||||  |||||    |||| |  | |    |  ||  | |     | |  | |  || ||| |  ||||||||
GATGGAAAAAGAGCCACCTTCAACTCTTATGTGGACTTTGTTCTTGTTGGCTCAGgtttgtgca-tattttttagatgat--gttttgatacattattttgtgggttcctccatatttt-ttctactcattgaatttttattggtgcag

upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA08G22180.1 (Glycine max), 5'ss of exon 13
GGAAGAAAAAGAGCCCCCTTCAACACTTATGTGGACTCTGTTTTTATTGGCTCAGgtttttcttctatcacatggatgattagttttctcccatttcctctacactgttctttctgcaactttgtttagggattttatgctggtgcag
|   || ||||| || |||||||| || ||||||||| ||||||||||||||||||||  |   |||| |  || ||  |||| ||     ||||  | | |                  ||   | ||  | ||| | |||||||||
GATGGACAAAGAACCTCCTTCAACTCTCATGTGGACTTTGTTTTTATTGGCTCAGgttggtag-ctattatttg-atttttagatt-----cattatcccca------------------ttcactaagataatttgtactggtgcag