Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGAGACTTGACCCAAAAAAGGACATGGATTTTGTTCCATTGCCTGCTCCACTTCTTCGCAAATATATTGCTTATGCACGAACTTTTGTCTTTCCGAGgtgattgtccattatttctgcctagcaaaattttcatgtttgcaattttgacttgactacaattgctaatattatctttctgttttatcag

Basic information

species Vitis vinifera
transcript Vv08s0040g03290.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g03290.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA19G36230.1 (Glycine max), 5'ss of exon 12
GGTTGAGACTTGACCCAAAAAAGGACATGGATTTTGTTCCATTGCCTGCTCCACTTCTTCGCAAATATATTGCTTATGCACGAACTTTTGTCTTTCCGAGgtgattgtccattatttctgcctagcaaaattttcatgtttgcaattt---tgactt--gactacaattgctaatattatctttctgtt--ttatcag
| ||||||||||||||  |||  |||   || ||||||||||| |||| || ||||||||||||||| |||||||||||| | | |||||||||||| ||||||||     |  | | |       |  ||| |  | ||    |||    ||   |  || |  | || ||     |    || | ||  |||| ||
GTTTGAGACTTGACCCCCAAAGAGACTGTGACTTTGTTCCATTACCTGGTCAACTTCTTCGCAAATACATTGCTTATGCAAGGAGTTTTGTCTTTCCTAGgtgatttaatgtcttatgtataccttatgattctagtcttaagtattcccgtggtctaagagtctattttctgtctcttctcttttatttcttattag