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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGGTAGCCCAATATTTTTCCTCGATGCATTCACAACTCTAATTGTGTTTTATTCTTCAACAGCAGACCCTATACTTCCTTACCCCCCACCTCATGATTgtaagttgattttaattgttgctgcctccatagaaccaatatagttttcaaaactgggacagaatttgattttgtctaaatgtcttctactacag

Basic information

species Vitis vinifera
transcript Vv06s0080g00510.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0080g00510.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA12G09540.1 (Glycine max), 5'ss of exon 13
AGTGGTAGCCCAATATTTTTCCTCGATGCATTCACAACTCTAATTGTGTTTTATTCTTCAACAGCAGACCCTATACTTCCTTACCCCCCACCTCATGATTgtaagttgattttaattg--ttgctg-cctccatagaaccaatatagttttcaaaactgggacagaatttgattttgtctaaatgtcttctactacag
||||| || || ||||||||||| ||||||||||||| ||| ||||||||||||||||| || |||||||| | ||||||||  || ||||| ||||||||||||     ||| |||    | ||| |||| ||  |   |||| |   ||      |  | |  || || ||     | ||||  ||| |    |||
AGTGGCAGTCCGATATTTTTCCTTGATGCATTCACAATTCTGATTGTGTTTTATTCTTCGACTGCAGACCCGACACTTCCTTTTCCTCCACCCCATGATTgtaagccttcttttatttaccttctgtcctcaatgcattaaatacaacgttt----ttcagcctaaactttatg----caaaataccttgt----cag

upper sequence: Vv06s0080g00510.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA11G18930.1 (Glycine max), 5'ss of exon 13
AGTGGTAGCCCAATATTTTTCCTCGATGCATTCACAACTCTAATTGTGTTTTATTCTTCAACAGCAGACCCTATACTTCCTTACCCCCCACCTCATGATTgtaagttgattttaattgttgctgcctccatagaaccaatatagttttcaaaactgggacagaatttgattttgtctaaatgtcttctactacag
||||| || || ||||||||||| ||||||||||||| ||| || |||||||||||||| ||||||||||| |  |||||||  || ||||| ||||||||||||     |||  || |  || |   | |     || || |  |  |     |  | |  || || ||     | ||||  ||| |    |||
AGTGGCAGTCCGATATTTTTCCTTGATGCATTCACAATTCTGATAGTGTTTTATTCTTCGACAGCAGACCCGACGCTTCCTTTTCCTCCACCCCATGATTgtaagccttctttttttttaccttctgtcctcactgcattaaacataacgtttttctgcctaaactttatg----caaaataccttgt----cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110730515|gb|EE107679.1|EE107679
EST:     TTATTCTTCAACAGCAGACCCTATACTTCCTTACCCCCCACCTCATGATT                         GTTTATTGCGCACTACAATCAACAAATTGAAGCAAGAGAGAAGTATCACTC
genomic: TTATTCTTCAACAGCAGACCCTATACTTCCTTACCCCCCACCTCATGATTgtaagttgat ... tctactacagGTTTATTGCGCACTACAATCAACAAATTGAAGCAAGAGAGAAGTATCACTC
EST: gi|294964763|gb|GW838566.1|GW838566
EST:     TTATTCTTCAACAGCAGACCCTATACTTCCTTACCCCCCACCTCATGATT                         GTTTATTGCGCACTAAAATCAACAAATTGAAGCAAGAGAGAAGTATCACTC
genomic: TTATTCTTCAACAGCAGACCCTATACTTCCTTACCCCCCACCTCATGATTgtaagttgat ... tctactacagGTTTATTGCGCACTACAATCAACAAATTGAAGCAAGAGAGAAGTATCACTC