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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGATCCAGTCGGTTTTTGAGCTATCAGATGGTTCGGGCTTGGCCGTTACAGTAGCTCGTTATGAGACACCTGCTCACATTGATATTGACAAGgtttggctctaattcttggtccctcttttcgagtgtgcgagtgtgcacagggcagcaggcaaaccatgcatatcttactgtccctgtttcttttatttttcttgcactttag

Basic information

species Vitis vinifera
transcript Vv05s0077g00060.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g00060.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA20G34110.1 (Glycine max), 5'ss of exon 13
CAAGATCCAGTCGGTTTTTGAGCTATCAGATGGTTCGGGCTTGGCCGTTACAGTAGCTCGTTATGAGACACCTGCTCACATTGATATTGACAAGgtttggctctaattcttggtccctcttttcgagtgtgcgagtgtgcacagggca---gcaggcaaaccatgcatatcttactgtccctgtttcttttatttttcttgcactttag
 |||||||| || ||||||||||| || ||||| || || ||||  ||||| || ||||| || ||||||||||| || |  |||||||||||||||||    | |||||    | |       |  |  |   |    |||  ||||   ||| | |                                                   
GAAGATCCAATCAGTTTTTGAGCTCTCTGATGGCTCTGGATTGGTTGTTACTGTTGCTCGCTACGAGACACCTGCACATACAGATATTGACAAGgtttgctcttgattctccacctcctaaactggtttcgtccgctaacacccggcatttgcatgtag--------------------------------------------------

upper sequence: Vv05s0077g00060.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT4G17740.2 (Arabidopsis thaliana), 5'ss of exon 12
CAAGATCCAGTCGGTTTTTGAGCTATCAGATGGTTCGGGCTTGGCCGTTACAGTAGCTCGTTATGAGACACCTGCTCACATTGATATTGACAAGgtttggctctaattcttggtccctcttttcgagtgtgcgagtgtgcacagggcagcaggcaaaccatgcatatcttactgtccctgtttcttttatttttcttgcactttag
|||||| ||||||||||||||||| || ||||||||||||||||| || ||||| ||||| ||||| ||||| |||||||  ||||| ||||| || ||   ||| ||  |  |||     |       |  | || | |||    |  ||  ||||| |||    |||||| |||  ||  || ||  |  || ||| |      
CAAGATACAGTCGGTTTTTGAGCTTTCTGATGGTTCGGGCTTGGCAGTAACAGTTGCTCGATATGAAACACCAGCTCACACAGATATAGACAAAgtatgaaactactttct--tcctgtagtaaccccctctgtgtctacactacactacatacaaac-atgt---tcttacagtct-tgactcgttgctggttgttgtatag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349821096|gb|FQ404349.1|FQ404349
EST:     CTGTTACAGTAGCTCGTTATGAGACACCTGCTCACATTGATATTGACAAG                         GTTGGCATCGCTCCAGACCATCCTCTTCCAACTCCATTTCCCAAGGATGCT
genomic: CCGTTACAGTAGCTCGTTATGAGACACCTGCTCACATTGATATTGACAAGgtttggctct ... tgcactttagGTTGGCATCGCTCCAGACCATCCTCTTCCAACTCCATTTCCCAAGGATGCT
EST: gi|349809249|gb|FQ399023.1|FQ399023
EST:     CTGTTACAGTAGCTCGTTATGAGACACCTGCTCACATTGATATTGACAAG                         GTTGGCATCGCTCCAGACCATCCTCTTCCAACTCCATTTCCCAAGGATGCT
genomic: CCGTTACAGTAGCTCGTTATGAGACACCTGCTCACATTGATATTGACAAGgtttggctct ... tgcactttagGTTGGCATCGCTCCAGACCATCCTCTTCCAACTCCATTTCCCAAGGATGCT
EST: gi|351036039|gb|FQ463884.1|FQ463884
EST:     CTGTTACAGTAGCTCGTTATGAGACACCTGCTCACATTGATATTGACAAG                         GTTGGCATCGCTCCAGACCATCCTCTTCCAACCCCATTTCCCAAGGATGCT
genomic: CCGTTACAGTAGCTCGTTATGAGACACCTGCTCACATTGATATTGACAAGgtttggctct ... tgcactttagGTTGGCATCGCTCCAGACCATCCTCTTCCAACTCCATTTCCCAAGGATGCT