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CTTCCGAATGAGGTCAATGATGAATGTTCCTCATCTCAGATCACAGCTTCTCCTTTTGCCTCTGGAGACAATCTTGAAGCATCCATTAAGTCCATTGAAGgttaaacattttcttaggccgcatcaataatacagtagaaagtaaacccggcatgttttttagttgcatgctttgtatcaaacagttctatttttatgta...
species | Vitis vinifera |
transcript | Vv04s0044g01700.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TCCTTTTGCCTCTGGAGACAATCTTGAAGCATCCATTAAGTCCATTGAAG GTATGCCTACCATCCATAGTGGAGGAATTCCTTCGCCAAGCAAAAGCAGCTEST: gi|110687435|gb|EE064841.1|EE064841
genomic: TCCTTTTGCCTCTGGAGACAATCTTGAAGCATCCATTAAGTCCATTGAAGgttaaacatt ... tctataacagGTATGCCTACCATCCATAGTGGAGGAATTCCTTCGCCAGGCAAAAGCAGCT
EST: CCTTTTGCCCTCTGGAGACA-TCTTGAAGCATCCATTAAGTCCATTGAAG GTATGCCTACCATCCATAGTGGAGGAATTCEST: gi|110699096|gb|EE077338.1|EE077338
genomic: CCTTTTGCC-TCTGGAGACAATCTTGAAGCATCCATTAAGTCCATTGAAGgttaaacatt ... tctataacagGTATGCCTACCATCCATAGTGGAGGAATTC
EST: TCCTTTTGCCTCTGGAGACAATCTTGAAGCATCCATTAAGTCCATTGAAG GTATGCCTACCATCCATAGTGGAGGAATTCCTTCGCCAGGCAAAAGCAGCTEST: gi|110694987|gb|EE072492.1|EE072492
genomic: TCCTTTTGCCTCTGGAGACAATCTTGAAGCATCCATTAAGTCCATTGAAGgttaaacatt ... tctataacagGTATGCCTACCATCCATAGTGGAGGAATTCCTTCGCCAGGCAAAAGCAGCT
EST: TCCTTTTGCCTCTGGAGACAATCTTGAAGCATCCATTAAGTCCATTGAAG GTATGCCTACCATCCATAGTGGAGGAATTCCTTCGCCAAGCAAAAGCAGCTEST: gi|110358837|gb|EC923343.1|EC923343
genomic: TCCTTTTGCCTCTGGAGACAATCTTGAAGCATCCATTAAGTCCATTGAAGgttaaacatt ... tctataacagGTATGCCTACCATCCATAGTGGAGGAATTCCTTCGCCAGGCAAAAGCAGCT
EST: AAGCATCCATTAAGTCCATTGAAG GTATGCCTACCATCCATAGTGGAGGAATTCCTTCGCCAAGCAAAAGCAGCT
genomic: AAGCATCCATTAAGTCCATTGAAGgttaaacatt ... tctataacagGTATGCCTACCATCCATAGTGGAGGAATTCCTTCGCCAGGCAAAAGCAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCCGAATGAGGTCAATGATGAATGTTCCTCATCTCAGATCACAGCTTCTCCTTTTGCCTCTGGAGACAATCTTGAAGCATCCATTAAGTCCATTGAAGgttaaacattttcttaggccgcatcaataatacagtagaaagtaaacccggcatgttttttagttgcatgctttgtatcaaacagttctatttttatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagtaaa