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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATACTTCAAAGATGCTTTTGGCTGCAATTGATGAACGCCACCGGGGGACTTACGATTTCATTTACCTACCCATTGATTTCAAGgcaagtgcattttttaccagaaagaaatgcttttatcatgtagagtggggatgatgattgagggaggaatcactattaccatttaaatttcactttggcttccttgtgtgttatacaattcatttggtctatacccctttttatttaattatttaatttatttatttttgcag

Basic information

species Vitis vinifera
transcript Vv01s0150g00090.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0150g00090.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G451716_T01 (Zea mays), 5'ss of exon 12
ATATACTTCAAAGATGCTTTTGGCTGCAATTGATGAACGCCACCGGGGGACTTACGATTTCATTTACCTACCCATTGATTTCAAGgcaagtgcattttttaccagaaagaaatgcttttatcatgtagagtggggatgatgattgagggaggaatcactattaccatttaaatttcactttggcttccttgtgtgttatacaattcatttggtctatacccctttttatttaattatttaatttatttatttttgcag
 || || |||||||||||| |||| || ||||||||| | |||||||| ||||| ||||| || ||||| || ||||| || ||||  ||||  | |  ||  ||                               |  || ||    ||    ||  || |   |  |    |||  | |  ||| | ||| ||||  || |  ||||      ||  || |||| |                              
GTACACATCAAAGATGCTTCTGGCAGCTATTGATGAAAGTCACCGGGGAACTTATGATTTTATCTACCTGCCAATTGACTTTAAGgtgagtg-gtctggtattag-------------------------------tcttggttagcagatagttctttaattttacctg--cttctttgttacttgcatgtttgttggactaaacattaa--taatctccattttcag-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83274793|gb|DV938889.1|DV938889
EST:     AACGCCACCGGGGGACTTACGATTTCATTTACCTACCCATTGATTTCAAG                         AACAAATGCAATGTAGGGTATGCCTTTATCAACATGACCGATCCTTGCCAG
genomic: AACGCCACCGGGGGACTTACGATTTCATTTACCTACCCATTGATTTCAAGgcaagtgcat ... atttttgcagAACAAATGCAATGTAGGGTATGCCTTTATCAACATGACCGATCCTTGCCAG
EST: gi|46910430|gb|CN545805.1|CN545805
EST:     GGGGGACTTACGATTTCATTTACCTACCCATTGATTTCAAG                         AACAAATGCAATGTAGGGTATGCCTTTATCAACATGACCGATCCTTGCCAG
genomic: GGGGGACTTACGATTTCATTTACCTACCCATTGATTTCAAGgcaagtgcat ... atttttgcagAACAAATGCAATGTAGGGTATGCCTTTATCAACATGACCGATCCTTGCCAG
EST: gi|110732197|gb|EE107275.1|EE107275
EST:     AACGCCACCGGGGGACTTACGATTTCATTTATCTACCCATTGATTTCAAG                         AACAAATGCAATGTAGGGTATGCCTTTATCAACATGACCGATCCTTGCCAG
genomic: AACGCCACCGGGGGACTTACGATTTCATTTACCTACCCATTGATTTCAAGgcaagtgcat ... atttttgcagAACAAATGCAATGTAGGGTATGCCTTTATCAACATGACCGATCCTTGCCAG
EST: gi|110429936|gb|EC996451.1|EC996451
EST:     AACGCCACCGGGGTACTTACGATTTCATTTATCTACCCATTGATTTCAAG                         AACAAATGCAATGTAGGGTATGCCTTTATCAACATGACCGATCCTTGCCAG
genomic: AACGCCACCGGGGGACTTACGATTTCATTTACCTACCCATTGATTTCAAGgcaagtgcat ... atttttgcagAACAAATGCAATGTAGGGTATGCCTTTATCAACATGACCGATCCTTGCCAG
EST: gi|110389267|gb|EC954091.1|EC954091
EST:     AACGCCACCGGGGGACTTACGATTTCATTTATCTACCCATTGATTTCAAG                         AACAAATGCAATGTAGGGTATGCCTTTATCAACATGACCGATCCTTGCCAG
genomic: AACGCCACCGGGGGACTTACGATTTCATTTACCTACCCATTGATTTCAAGgcaagtgcat ... atttttgcagAACAAATGCAATGTAGGGTATGCCTTTATCAACATGACCGATCCTTGCCAG
EST: gi|32245389|gb|CD711208.1|CD711208
EST:     AACGCCACCGGGGTACTTACGATTTCATTTATCTACCCATTGATTTCAAG                         AACAAATGCAATGTAGGGTATGCCTTTATCAACATGACCGATCCTTGCCAG
genomic: AACGCCACCGGGGGACTTACGATTTCATTTACCTACCCATTGATTTCAAGgcaagtgcat ... atttttgcagAACAAATGCAATGTAGGGTATGCCTTTATCAACATGACCGATCCTTGCCAG