1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGATGATGGTTTTCGCTTTGTTATTTGGTTTGGAAGAATGCTTTCACCTGAAATAGCTATGAATCTACTTGGGCAAGACTTTGCTGCTGATTTATCGAAGgtttgttctttcattagtaatggttttaattaatagctttaaactatcaggtttatatcagttttaatggtgtattagagagagggaggacaatgagata...
species | Vitis vinifera |
transcript | Vv19s0014g01900.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AAATAGCTATGAATCTACTTGGGCAAGACTTTGCTGCTGATTTATCGAAG GTTAGTCTTTATGAGCATGACAATGAAATGTCAAGAAAGCTAATGGGCATAEST: gi|110695491|gb|EE073572.1|EE073572
genomic: AAATAGCTATGAATCTACTTGGGCAAGACTTTGCTGCTGATTTATCGAAGgtttgttctt ... tgagaatcagGTTAGTCTTTATGAGCATGACAATGAAATGTCAAGAAAGCTAATGGGCATA
EST: AAATAGCTATGAATCTACTTGGGCAAGACTTTGCTGCTGATTTATCGAAG GTTAGTCTTTATGAGCATGACAATGAAATGTCAAGAAAGCTAATGGGCATAEST: gi|110718185|gb|EE094730.1|EE094730
genomic: AAATAGCTATGAATCTACTTGGGCAAGACTTTGCTGCTGATTTATCGAAGgtttgttctt ... tgagaatcagGTTAGTCTTTATGAGCATGACAATGAAATGTCAAGAAAGCTAATGGGCATA
EST: AAATAGCTATGAATCTACTTGGGCAAGACTTTGCTGCTGATTTATCGAAG GTTAGTCTTTATGAGCATGACAATGAAATGTCAAGAAAGCTAATGGGCATAEST: gi|33406528|gb|CF212155.1|CF212155
genomic: AAATAGCTATGAATCTACTTGGGCAAGACTTTGCTGCTGATTTATCGAAGgtttgttctt ... tgagaatcagGTTAGTCTTTATGAGCATGACAATGAAATGTCAAGAAAGCTAATGGGCATA
EST: AAATAGCTATGAATCTACTTGGGCAAGACTTTGCTGCTGATTTATCGAAG GTTAGTCTTTATGAGCATGACAATGAAATGTCAAGAAAGCTAATGGGCACAEST: gi|33406608|gb|CF212235.1|CF212235
genomic: AAATAGCTATGAATCTACTTGGGCAAGACTTTGCTGCTGATTTATCGAAGgtttgttctt ... tgagaatcagGTTAGTCTTTATGAGCATGACAATGAAATGTCAAGAAAGCTAATGGGCATA
EST: AAATAGCTATGAATCTACTTGGGCAAGACTTTGCTGCTGATTTATCGAAG GTTAGTCTTTATGAGCATGACAATGAAATGTCAAGAAAGCTAATGGGCACA
genomic: AAATAGCTATGAATCTACTTGGGCAAGACTTTGCTGCTGATTTATCGAAGgtttgttctt ... tgagaatcagGTTAGTCTTTATGAGCATGACAATGAAATGTCAAGAAAGCTAATGGGCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGATGGTTTTCGCTTTGTTATTTGGTTTGGAAGAATGCTTTCACCTGAAATAGCTATGAATCTACTTGGGCAAGACTTTGCTGCTGATTTATCGAAGgtttgttctttcattagtaatggttttaattaatagctttaaactatcaggtttatatcagttttaatggtgtattagagagagggaggacaatgagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggacaa