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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTATATCCTTCCTAAGATCGCTGAAAGAGACTTGCGGCGATTTGCCAATTTGCGTTCAACTTCTTCAAACTTGGGAATTCATTTTCCGTTGCACGAGgtatgactctctttgtgactttttgattctatatttttttatccttgtgtaatttgtttaaattgaagttctgaagaaaatctcatgagtcctctgaataaaattatagtagcacaagggtgtgtgaggacatcccatgaaatatatgattgcttatttatcggctgaaaattttttccatgtcacag

Basic information

species Vitis vinifera
transcript Vv16s0100g01300.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0100g01300.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA16G31860.1 (Glycine max), 5'ss of exon 13
TGAGTATATCCTTCCTAAGATCGCTGAAAGAGACTTGCGGCGATTTGCCAATTTGCGTTCAACTTCTTCAAACTTGGGAATTCATTTTCCGTTGCACGAGgtatgactc-tctttgtgactttttgattctatatttttttatccttgtgtaatttgtttaaattgaagttctgaagaaaatctcatgagtcctctgaataaaattatagtagcacaagggtgtgtgaggacatcccatgaaatatatgattgcttatttatcggctgaaaattttttccatgtcacag
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TGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAGgtactgctaaccctttccactacctaatta-agatttcattactgtcag--agctcatgtgaa---aagtttt----aatatttaaacattattttaaactaaataaaag-------------------------------------------------------------------------------