Sequence
atgc intronic sequence ATGC exonic sequenceTTTGTTGCTGCAACTCAACCGATAAATTCTTTGGCCTTTGTCTTCGACGGCGTGAACTTTGGAGCATCGGATTTTGCATATTCTGCATACTCCATGgcaagtctattaaccccttgtgcatgccataaaaatgcctgacatgcaagaatagggaatgagaataacagaatttggattacttactagatcaaatgaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0064g00940.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA09G15550.1 (Glycine max), 5'ss of exon 11
TTTGTTGCTGCAACTCAACCGATAAATTCTTTGGCCTTTGTCTTCGACGGCGTGAACTTTGGAGCATCGGATTTTGCATATTCTGCATACTCCATGgcaagtctattaaccccttgtgcatgccataaaaatgcctgacatgcaagaatagggaatgagaataacagaatt-tggattacttactagatcaaatgaa
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TTTGTTGCTGCCACACAACCAATCAATTCATTAGCCTTTGTCTTTGATGGTGTGAACTATGGGGCATCTGATTTTGCATATTCTGCATACTCCTTGgtaagttctctcatacaata-acttttattaaaaaaaagtattcgtcatctctatcaaatttatttagcaaatttctatgctcataatttgttcag-----
upper sequence: Vv13s0064g00940.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA13G27300.1 (Glycine max), 5'ss of exon 12
TTTGTTGCTGCAACTCAACCGATAAATTCTTTGGCCTTTGTCTTCGACGGCGTGAACTTTGGAGCATCGGATTTTGCATATTCTGCATACTCCATGgcaagtctattaaccccttgtgcatgccata-aaaatgcctgacatgcaagaatagggaatgagaataacagaatttggattacttactagatcaaatgaa
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TTTGTGGCTGCTACTCAACCAATCAATTCATTAGCCTTTGTATTTGATGGAGTGAACTATGGAGCTTCTGATTTTGCATATTCAGCATACTCTCTGGCAAgttcacatgcctttttttcgtcctttttatcatatttaattatccaaatttaattatcagtttaa-----ttttgactaatttcttttgcag-----
upper sequence: Vv13s0064g00940.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA12G36610.1 (Glycine max), 5'ss of exon 10
TTTGTTGCTGCAACTCAACCGATAAATTCTTTGGCCTTTGTCTTCGACGGCGTGAACTTTGGAGCATCGGATTTTGCATATTCTGCATACTCCATGgcaagtctattaaccccttgtgcatgccataaaaatgcctgacatgcaagaatagggaatgagaataacagaatttggattacttactagatcaaatgaa
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--------AGCTACTCAACCAATCAATTCATTGGCCTTTGTCTTTGATGGTGTCAACTATGGGGCATCCGATTTTGCATATTCTGCCTATTCTTTGGCAAGTTTGCATgtccttttt---cacccttttcatactatatcctccttaccaa--aatttatttagtaatttttccctaatctctttgtttag-----
upper sequence: Vv13s0064g00940.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA12G36620.1 (Glycine max), 5'ss of exon 13
TTTGTTGCTGCAACTCAACCGATAAATTCTTTGGCCTTTGTCTTCGACGGCGTGAACTTTGGAGCATCGGATTTTGCATATTCTGCATACTCCATGgcaagtctattaaccccttgtgcatgccataaaaatgcctgacatgcaagaatagggaatgagaataacagaatttggattacttactagatcaaatgaa
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TTTGTGGCTGCTACTCAACCAATCAATTCATTAGCCTTTGTATTTGATGGAGTGAACTATGGTGCTTCTGATTTTGCATATTCAGCATACTCTCTGGCAAgttcacacatgccct-tcttttcatttatgatatttttcatctttaattatccaaatttatcgatttaattttggttactttctttctttgcag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71869841|gb|DT018896.1|DT018896EST: ACGGCGTGAACTTTGGAGCATCGGATTTTGCATATTCTGCATACTCCATG ATTTTGGTGGCCATTGTGAGCATTGCATCTTTATTCTGCCTCTCCAAGAGC
genomic: ACGGCGTGAACTTTGGAGCATCGGATTTTGCATATTCTGCATACTCCATGgcaagtctat ... tgatcctcagATTTTGGTGGCCATTGTGAGCATTGCATCTTTATTCTGCCTCTCCAAGAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTGTTGCTGCAACTCAACCGATAAATTCTTTGGCCTTTGTCTTCGACGGCGTGAACTTTGGAGCATCGGATTTTGCATATTCTGCATACTCCATGgcaagtctattaaccccttgtgcatgccataaaaatgcctgacatgcaagaatagggaatgagaataacagaatttggattacttactagatcaaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agggaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agatcaaa