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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGCTGTCGGTTGTTGCACATATTGAAAAGGTTGCTTCCAATCTCTGTCTTTCTTCTTCAGgtatgagattagtcatctcttagactggtaatcttttttccttttgcatataaaactttctgaatattatgcatctaatttctggtaatttttttggggttacttatccttcctttacttgactggtttccaatag

Basic information

species Vitis vinifera
transcript Vv12s0055g00490.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0055g00490.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA05G24890.1 (Glycine max), 5'ss of exon 8
TTGGGCTGTCGGTTGTTGCACATATTGAAAAGGTTGCTTCCAATCTCTGTCTTTCTTCTTCAGgtatgagattagtcatctcttagactggtaatcttttttccttttgcatataaaactttctgaatattatgcatctaatttctggtaatttttttggggttacttatccttcctttacttgactggtttccaatag
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TTGGGGTCCAGGCTGTTGTATATACTTAAGAGATTGCTTCCGATCTCTGTTTTTCTTCTTCAGgtat-----------tctcttcggat----------ttttctgtaagatataaaatatt-tgaatctta-gcgtaacagcttcagc------ttttaggatacctag---ttcttgacatga-tagcatccat---

upper sequence: Vv12s0055g00490.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G07990.2 (Glycine max), 5'ss of exon 10
TTGGGCTGTCGGTTGTTGCACATATTGAAAAGGTTGCTTCCAATCTCTGTCTTTCTTCTTCAGgtatgagattagtcatctcttagactggtaatcttttttccttttgcatataaaactttctgaatattatgcatctaatttctggtaatttttttggggttacttatccttcctttacttgactggtttccaatag
||||| |   |  ||||| | ||| | || || |||||||| |||||||| ||||||||||||||||    || |   | | |   |    |||  | |||   | ||     ||| |  ||| |  | |     | ||| ||  ||  |   | |   | ||                                    
TTGGGGTCCAGACTGTTGTATATACTCAAGAGATTGCTTCCGATCTCTGTTTTTCTTCTTCAGgtattctctttggattttttgtaagatataaaatatttgaatctta-gcgtaacagcttcagcttttaggatacctagttcttgacatgatatcaagagta-----------------------------------