1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TTTCGGGAAGCTGCAAAGGAGGAGGACGATTCTGCACTGCTGCGGATGATGTCAAACTATGgtatgcactttaataaactaacaaataacatttacactgaagtctaccaacaacatgaaaataactcacttgagttctcatggcag
species | Vitis vinifera |
transcript | Vv09s0054g00220.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TGCAAAGGAGGAGGACGATTCTGCACTGCTGCGGATGATGTCAAACTATG GTGAGGAATTGGTTACAGCTCTGGGTAGTGAAGTTGACAGGCTAGAAAAGGEST: gi|122691276|gb|EC971448.1|EC971448
genomic: TGCAAAGGAGGAGGACGATTCTGCACTGCTGCGGATGATGTCAAACTATGgtatgcactt ... ctcatggcagGTGAGGAAGTGGTTACAGCTCTGGGTAGTGAAGTTGACAGGCTAGAAAAGG
EST: TGCAAAGGAGGAGGACGATTCTGCACTGCTGCGGATGATGTCAAACTATG GTGAGGAAGTGGTTACAGCTCTGGGTAGTGAAGTTGACAGGCTAGAAAAGGEST: gi|122692139|gb|EC993179.1|EC993179
genomic: TGCAAAGGAGGAGGACGATTCTGCACTGCTGCGGATGATGTCAAACTATGgtatgcactt ... ctcatggcagGTGAGGAAGTGGTTACAGCTCTGGGTAGTGAAGTTGACAGGCTAGAAAAGG
EST: TGCAAAGGAGGAGGACGATTCTGCACTGCTGCGGATGATGTCAAACTATG GTGAGGAAGTGGTTACAGCTCTGGGTAGTGAAGTTGACAGGCTAGAAAAGG
genomic: TGCAAAGGAGGAGGACGATTCTGCACTGCTGCGGATGATGTCAAACTATGgtatgcactt ... ctcatggcagGTGAGGAAGTGGTTACAGCTCTGGGTAGTGAAGTTGACAGGCTAGAAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCGGGAAGCTGCAAAGGAGGAGGACGATTCTGCACTGCTGCGGATGATGTCAAACTATGgtatgcactttaataaactaacaaataacatttacactgaagtctaccaacaacatgaaaataactcacttgagttctcatggcag
- - - - - - GCAAAG
- - - - - - - AAGGAG
- - - - - - - - GGAGGA
- - - - - - - - - GAGGAG
- - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - TGCTGC