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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTCAGAGAGCTACTGGTACTGGATTGGAGCTGCTTGTCTTTTGGGGTTCACCATTCTCTTCAACATTCTCTTCACCTTCTCGCTTATGTACCTGAATCgtaagttcaaagaatattatatctgtatctgaagattgaatccaggaccttatttgtttagaggataagttttcttttctgatactgtctcttcttctttgaaatag

Basic information

species Vitis vinifera
transcript Vv09s0002g03580.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03580.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 12
GACTCAGAGAGCTACTGGTACTGGATTGGAGCTGCTTGTCTTTTGGGGTTCACCATTCTCTTCAACATTCTCTTCACCTTCTCGCTTATGTACCTGAATCgtaagttcaaaga----atattatatctgtatctgaagattgaatccaggaccttatttgtttagaggataagttttcttttctgat-actgtctcttcttctttgaaatag--
      || |   ||||||||||||||||||| ||  | || ||||| ||||||||  |||||||  | || |||||  | ||||||||||||||||| |||||| ||  |       | ||   ||  |   |      | ||   || | |  | |  |    | ||||  |||| | ||   || |    |   | |||||| |       
TTTGTTGACAAAAACTGGTACTGGATTGGAGCAGCAGGGCTCTTGGGTTTCACCATCTTCTTCAATGTCCTTTTCACACTGTCGCTTATGTACCTGAACCgtaagctctgaattattgtgttgattccttgcttatcaccttaaaatagaatccgaatcctgccaatgatattttttgtgttaatatcagcaacatatgttctttaattctcag

upper sequence: Vv09s0002g03580.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G21540.2 (Glycine max), 5'ss of exon 12
GACTCAGAGAGCTACTGGTACTGGATTGGAGCTGCTTGTCTTTTGGGGTTCACCATTCTCTTCAACATTCTCTTCACCTTCTCGCTTATGTACCTGAATCgtaagttcaaagaatattatatctgtatctgaagattgaatccaggaccttatttgtttagaggataagttttcttttctgatactgtctcttcttctttgaaatag
 |  |  | |   | |||||||||||||||||||||  |||| | || |||||  |||| | |||| ||||||||||| |  ||||||||||||| || ||||||  |         |  |||  ||| | |||  ||| | |      ||  |   |||      ||| ||  ||||||    || | |||| ||   || | |||
TATGCTAAAAAAGATTGGTACTGGATTGGAGCTGCTGCTCTTCTTGGTTTCACAGTTCTGTACAACGTTCTCTTCACCCTTGCGCTTATGTACCTTAACCgtaagagctcttgcatcttgatcaatatttcaag--tgacttctttcattttctatcttacta---aagcttaattttct----ctat-tcttgtttggtgcattag

upper sequence: Vv09s0002g03580.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA07G01860.1 (Glycine max), 5'ss of exon 13
GACTCAGAGAGCTACTGGTACTGGATTGGAGCTGCTTGTCTTTTGGGGTTCACCATTCTCTTCAACATTCTCTTCACCTTCTCGCTTATGTACCTGAATCgtaagttcaaagaatattatatctgtatctgaagattgaatccaggaccttatttgtttagaggataagttttcttttctgatactgtctcttcttctttgaaatag
 |  |  | |   |||||||||||||||||||||||  |||| | || |||||  |||| | |||  ||||||||||| |  ||||||||||||| || ||||||  |  | |   | ||   | | ||    || | | |         ||| |   || ||  |   || ||| ||||  |   ||   ||              
TATGCTAAAAAAGACTGGTACTGGATTGGAGCTGCTGCTCTTCTTGGTTTCACAGTTCTGTACAATGTTCTCTTCACCCTTGCGCTTATGTACCTTAACCgtaagagctcacatcttgatcaatctttcaagtgacttactttcattttctatcttactaaagctt---ttatctattcttgtttggtgcattag------------