Sequence
atgc intronic sequence ATGC exonic sequenceGAGAGAGAGAGCAGAAAGGGCCAAAGCAGAGGACTTTGATGCAGAAGAAGGGGAACTGCTAAAAGAAGAAAATGAGCAAGAAGAAGAGCTCTTTGATCAAgtatgctcttcagacatatttatgttgaaaattgggtttgttagttgatcggttgtgttctcctgcttttagattgtaaatgtgttgattcttgttgcctttatgtcctttttaatacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g07240.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA16G04400.2 (Glycine max), 5'ss of exon 12
GAGAGAGAGAGCAGAAAGGGCCAAAGCAGAGGACTTTGATGCAGAAGAAGGGGAACTGCTAAAAGAAGAAAATGAGCAAGAAGAAGAGCTCTTTGATCAAgtatgctcttcagacatatttatgttgaaaattgggtttgttagttgatcggttgtgttctcctgcttttagattgtaaatgtgttgattcttgttgcctttatgtcctttttaatacag
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ACATGAAAGAGCAGAGAGGGCCAAAGAAGAGGACTTTGATGCTGAAGAAAGAGAACTACTCAAAGAAGAAAATGAGCAAGAAGAGGAACTTTTTGATCAAgtatgctcagtaatc-tgtttttgt---gatctgagtcacttgattaaatacttttttttatgtgctgttcta--gctcttattttgaatcaatgtgttctag-----------------
upper sequence: Vv08s0007g07240.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA19G29010.1 (Glycine max), 5'ss of exon 12
GAGAGAGAGAGCAGAAAGGGCCAAAGCAGAGGACTTTGATGCAGAAGAAGGGGAACTGCTAAAAGAAGAAAATGAGCAAGAAGAAGAGCTCTTTGATCAAgtatgctcttcagac-atatttatgttgaaaattgggtttgttagttgatcggt---tgtgttctcctgcttttagattgtaaatgtgttgattcttgttgcctttatgtcctttttaatacag
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ACATGAAAGAGCAGAGAGGGCCAAAGAAGAGGACTTTGATGCTGAAGAAAGAGAACTACTCAATGAAGAAAATGAGCAAGAAGAGGAGCTTTTTGATCAAgtatgctgagtaatctgtttttgtgatctgaatcac-ttcattaaatactttttttatgtgctgttctagctctt-attttgaatcaatgtgttctag--------------------------
upper sequence: Vv08s0007g07240.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S31_225V6.1 (Physcomitrella patens), 5'ss of exon 12
GAGAGAGAGAGCAGAAAGGGCCAAAGCAGAGGACTTTGATGCAGAAGAAGGGGAACTGCTAAAAGAAGAAAATGAGCAAGAAGAAGAGCTCTTTGATCAAgtatgctcttcaga-catatttatgttgaaaattgggtttgttagttgatcggtt-gtgttctcctgcttttagattgtaaatgtgttgattcttgttgcctttatgtcctttttaatacag
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AAGGGAGCGAGCTGAGAGAACTCAAACTGAAGATTTTGATGCTGAAGAAGGGGAACTTCTTGAGGAAGAAAACGAGCAAGAAGAAGAGGTTTTCGAACAGgtgtgcacctcgaagtactaatttgtttttgatt--tttttgtagtttttaaattcaagttattatgtttctgtatacgttatgtatttttttttactatgttt---tactttgcag-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37184053|gb|CF603407.1|CF603407EST: GGGAACTGCTAAAAGAAGAAAATGAGCAAGAAGAAGAGCTCTTTGATCAA ATCGGTGATTGCTTGGGCACTTTGATCAAAACCTTCAAGTCTTCTTTCTTG
genomic: GGGAACTGCTAAAAGAAGAAAATGAGCAAGAAGAAGAGCTCTTTGATCAAgtatgctctt ... tttaatacagATCGGTGATTGCTTGGGCACTTTGATCAAAACCTTCAAGTCTTCTTTCTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGAGAGAGAGCAGAAAGGGCCAAAGCAGAGGACTTTGATGCAGAAGAAGGGGAACTGCTAAAAGAAGAAAATGAGCAAGAAGAAGAGCTCTTTGATCAAgtatgctcttcagacatatttatgttgaaaattgggtttgttagttgatcggttgtgttctcctgcttttagattgtaaatgtgttgattcttgttgcctttatgtcctttttaatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT