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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTTGTCAAAGAGAAAGTCCGAGAGGCTAAAAAAGCCAATAGACAGgtattttatagtagataccagtcgttgcaatagttttggtcttgcacataaatttcaaatatgtgagtacttgttaattccttttcttgtag

Basic information

species Vitis vinifera
transcript Vv07s0031g01480.t01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22013324|gb|BQ798358.1|BQ798358
EST:     AGGATTTTGTCAAAGAGAAAGTCCGAGAGGCTAAAAAAGCCAATAGACAG                         GCTAGAGAAGCCCGNNNNNNNGCGCTTGAAGAAATGAGTGAGGAGGCTAAA
genomic: AGGATTTTGTCAAAGAGAAAGTCCGAGAGGCTAAAAAAGCCAATAGACAGgtattttata ... tttcttgtagGCTAGAGAAGCCCGAAAAAAAGCGCTTGAAGAAATGAGTGAGGAGGCTAAA
EST: gi|30256234|gb|CB972077.1|CB972077
EST:     GATTTTGTCAAAGAGAAAGTCCGAGAGGCTAAAAAAGCCAATAGACAG                         GCTAGAGAAGCCCGNNNNNNNGCGCTTGAAGAAATGGGTGAGGAGGCTAAA
genomic: GATTTTGTCAAAGAGAAAGTCCGAGAGGCTAAAAAAGCCAATAGACAGgtattttata ... tttcttgtagGCTAGAGAAGCCCGAAAAAAAGCGCTTGAAGAAATGAGTGAGGAGGCTAAA
EST: gi|22013340|gb|BQ798374.1|BQ798374
EST:     AGAGGCTAAAAAAGCCAATAGACAG                         GCTAGAGAAGCCCGNNNNNNNGCGCTTGAAGAAATGAGTGAGGAGGCTAAA
genomic: AGAGGCTAAAAAAGCCAATAGACAGgtattttata ... tttcttgtagGCTAGAGAAGCCCGAAAAAAAGCGCTTGAAGAAATGAGTGAGGAGGCTAAA
EST: gi|22014631|gb|BQ799665.1|BQ799665
EST:     GATTTTGTCAAAGAGAAAGTCCGAGAGGCTAAAAAAGCCAATAGACAG                         GCTAGAGAAGCCCGNNNNNNNGCGCTTGAAGAAATGAGTGAGGAGGCTAAA
genomic: GATTTTGTCAAAGAGAAAGTCCGAGAGGCTAAAAAAGCCAATAGACAGgtattttata ... tttcttgtagGCTAGAGAAGCCCGAAAAAAAGCGCTTGAAGAAATGAGTGAGGAGGCTAAA
EST: gi|37188989|gb|CF608338.1|CF608338
EST:     GATTTTGTCAAAGAGAAAGTCCGAGAGGCTAAAAAAGCCAATAGACAG                         GCTAGAGAAGCCCGNNNNNNNGCGCTTGAAGAAATGAGTGAGGAGGCTAAA
genomic: GATTTTGTCAAAGAGAAAGTCCGAGAGGCTAAAAAAGCCAATAGACAGgtattttata ... tttcttgtagGCTAGAGAAGCCCGAAAAAAAGCGCTTGAAGAAATGAGTGAGGAGGCTAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATTTTGTCAAAGAGAAAGTCCGAGAGGCTAAAAAAGCCAATAGACAGgtattttatagtagataccagtcgttgcaatagttttggtcttgcacataaatttcaaatatgtgagtacttgttaattccttttcttgtag

- - - - - AAGAGA
- - - - - - - - - - - GAGAGG