Sequence
atgc intronic sequence ATGC exonic sequenceTACCTCGCTTAGTATTTGCTTTGCTTCGAAATCCTCTTCTTCGCTTCCATGAAGAAGGTGTACACCCTGACTACAGGATCTACCTGCAGTGCCTTTTCAGgtatttggtgatcatgtttgaatggttatgcctgggaattataatgcagtgtttttaggtaattaaaaaaatgttatgcattgaatcatttgccaaagtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0080g00510.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G106140_T01 (Zea mays), 5'ss of exon 12
TACCTCGCTTAGTATTTGCTTTGCTTCGAAATCCTCTTCTTCGCTTCCATGAAGAAGGTGTACACCCTGACTACAGGATCTACCTGCAGTGCCTTTTCAGgtatttggtgatcatgtttgaatggttatgcctgggaattataatgcagtgtttttaggtaattaaaaaaatgttatgcattga-atcatttgccaaagtt------
|||||| | || ||||| ||| | ||| ||||||||||||||| |||||||||||||||||||| || |||||||| || || || ||||||||||||| | || | | ||| | |||| || | | ||| | | |||| |||||| | |||| || | | ||||||
TACCTCAACTTGTTTTTGCATTGTTGAGAAGTCCTCTTCTTCGCTTGCATGAAGAAGGTGTACACCCAGATTACAGGATATATCTACAATGCCTTTTCAGgttcgtattgtttttatttc----gctatgttctgg---tttgcagcatatcctgtgaacaattttccttatgttaaactttgatattttatcccaaagaaggcttg
upper sequence: Vv06s0080g00510.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G141735_T01 (Zea mays), 5'ss of exon 12
TACCTCGCTTAGTATTTGCTTTGCTTCGAAATCCTCTTCTTCGCTTCCATGAAGAAGGTGTACACCCTGACTACAGGATCTACCTGCAGTGCCTTTTCAGgtatttggtgatcatgtttgaatggttatgcctgggaattataatgcagtgtttttaggta-attaaaaaaatgtt---atgcattgaatcattt-gccaaagtt
|||||| | || ||||| ||| | ||| ||||||||||||||| ||||| ||||| || ||||| || |||||||| || || || ||||||||||||| | | | | ||| | | |||| || ||| | | | | || || | || || ||| | | | | | ||| | | | |
TACCTCAGCTTGTTTTTGCATTGTTGAGAAGTCCTCTTCTTCGCTTGCATGAGGAAGGCGTGCACCCAGATTACAGGATATATCTACAATGCCTTTTCAGgt---tcatatttctatttcgctatgttctcctgtgagctatgttcct-tatattaagctttgttttaattttgtcccaaagaaaaggcttgtttagttagaat-
upper sequence: Vv06s0080g00510.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA12G09540.1 (Glycine max), 5'ss of exon 12
TACCTCGCTTAGTATTTGCTTTGCTTCGAAATCCTCTTCTTCGCTTCCATGAAGAAGGTGTACACCCTGACTACAGGATCTACCTGCAGTGCCTTTTCAGgtatttggtgatcatgtttgaatggttatgcctgggaattataatgcagtgtttttagg---taattaaaaaaatgttatgcattgaatcatttgccaaagtt
|||| ||| || | |||||| | ||||||||||||||||| ||||| |||||||| ||||| || |||||||| | ||||| || || |||||||||||||| ||| || || | || | ||| || || || || || | | || ||| | | | | | || |
TACCACGCCTAATTTTTGCTCTACTTCGAAATCCTCTTCTCCGCTTTCATGAAGAGGGTGTTCATCCTGACTATCGCATCTATCTTCAATGCCTTTTCAGgtaattgttgctctcaggtttatttgcacaa-tggagtttgcaaaatcatgccttaagtgtctggtggaaggaattaaacagactaacataaagatgaatg--
upper sequence: Vv06s0080g00510.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA11G18930.1 (Glycine max), 5'ss of exon 12
TACCTCGCTTAGTATTTGCTTTGCTTCGAAATCCTCTTCTTCGCTTCCATGAAGAAGGTGTACACCCTGACTACAGGATCTACCTGCAGTGCCTTTTCAGgtatttggtgatcatgtttgaatggttatgcctgggaattataatgcagtgtttttagg---taattaaaaaaatgttatgcattgaatcatttgccaaagtt
|||| ||| || | |||||| | ||||||||||||||||| ||||| |||||||| ||||| || |||||| | | ||||| || || |||||||||||||| |||||| || | || | ||| | || | || || || | | || ||| | | | | || |
TACCACGCCTAATTTTTGCTCTCCTTCGAAATCCTCTTCTCCGCTTTCATGAAGAGGGTGTTCATCCTGACCATCGCATCTATCTTCAATGCCTTTTCAGgtaattggtgctctcaggtttatttgcacaa-tggaatttgcataatcatgccttaagtgtctggtggaaggaattaaacagactagcataaagattaatg--
upper sequence: Vv06s0080g00510.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT2G27460.1 (Arabidopsis thaliana), 5'ss of exon 12
TACCTCGCTTAGTATTTGCTTTGCTTCGAAATCCTCTTCTTCGCTTCCATGAAGAAGGTGTACACCCTGACTACAGGATCTACCTGCAGTGCCTTTTCAGgtatttgg--tgatcatgtttgaatggttatgcctgggaattataatgcagtgtttttaggtaattaaaaaaatgttatg--cattgaatcatttgccaaagtt----------------------------------------------------------------------------------------------
| ||||| ||||| ||||| || || || ||||| ||||| || || |||||||||||||| || ||||| ||||| |||||| |||| |||||||||||||| || | | ||| | ||| | | | | || | | || || ||| | | || | | | || | ||||| ||| |
TGCCTCGTTTAGTCTTTGCCTTACTCCGTAATCCCCTTCTCCGGTTTCATGAAGAAGGTGTTCATCCTGATTACAGAATCTACTTGCAATGCCTTTTCAGgtaaccatcccaatgaactactaataacca-acctag-agtcagcgtg-aacaatattgtatatttagtgtattttttcgatcgtggatttatttggaaaaaataccttggtatctcatgtaaacagaccacaagcaaggctttagtctctaaatttcgtgtttgtgttcttctgttttgttttccttaaaactgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294964763|gb|GW838566.1|GW838566EST: GAAGAAGGTGTACACCCTGACTACAGGATCTACCTGCAGTGCCTTTTCAG TGCATTGGAACCAAGTTCCCTTCACCGTGCAGTATATCCAGTACTGACATC
genomic: GAAGAAGGTGTACACCCTGACTACAGGATCTACCTGCAGTGCCTTTTCAGgtatttggtg ... tttgatgcagTGCATTGGAACCAAGTTCCCTTCACCGTGCAGTATATCCAGTACTGACATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACCTCGCTTAGTATTTGCTTTGCTTCGAAATCCTCTTCTTCGCTTCCATGAAGAAGGTGTACACCCTGACTACAGGATCTACCTGCAGTGCCTTTTCAGgtatttggtgatcatgtttgaatggttatgcctgggaattataatgcagtgtttttaggtaattaaaaaaatgttatgcattgaatcatttgccaaagtt
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa