1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTGAATTGAAGAAGAAGAGCACCAAAACCAAAAGGCCCTCCATCAAGTCCCTCTTTGgtgagccttttttttttttttttccctcaatttttactagaacatgataaccactgtttattctgtaaaatgtatgttacttttcataattattggtgat...
species | Vitis vinifera |
transcript | Vv05s0049g01220.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GAAGAAGAAGAGCACCAAAACCAAAAGGCCCTCCATCAAGTCCCTCTTTG ATGATGAATCTGGTGCAGCTGCCAATGAACCTGTCCAGGGGAGCTTTCTCAEST: gi|32245340|gb|CD711159.1|CD711159
genomic: GAAGAAGAAGAGCACCAAAACCAAAAGGCCCTCCATCAAGTCCCTCTTTGgtgagccttt ... catgttgcagATGATGAATCTGGTGCAGCTGCCAATGAACCTGTCCAGGGGAGCTTTCTCA
EST: GAAGAAGAAGAGCACCAAAACCAAAAGGCCCTCCATCAAGTCCCTCTTTG ATGATGAATCTGGTGCAGCTGCCAATGAACCTGTCCAGGGGAGCTTTCTCAEST: gi|110700396|gb|EE078384.1|EE078384
genomic: GAAGAAGAAGAGCACCAAAACCAAAAGGCCCTCCATCAAGTCCCTCTTTGgtgagccttt ... catgttgcagATGATGAATCTGGTGCAGCTGCCAATGAACCTGTCCAGGGGAGCTTTCTCA
EST: GAAGAAGAAGAGCACCAAAACCAAAAGGCCCTCCATCAAGTCCCTCTTTG ATGATGAATCTGGTGCAGCTGCCAATGAACCTGTCCAGGGGAGCTTTCTCAEST: gi|46918703|gb|CN548032.1|CN548032
genomic: GAAGAAGAAGAGCACCAAAACCAAAAGGCCCTCCATCAAGTCCCTCTTTGgtgagccttt ... catgttgcagATGATGAATCTGGTGCAGCTGCCAATGAACCTGTCCAGGGGAGCTTTCTCA
EST: TCCATCAAGTCCCTCTTTG ATGATGAATCTGGTGCAGCTGCCAATGAACCTGTCCAGGGGAGCTTTCTCA
genomic: TCCATCAAGTCCCTCTTTGgtgagccttt ... catgttgcagATGATGAATCTGGTGCAGCTGCCAATGAACCTGTCCAGGGGAGCTTTCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAATTGAAGAAGAAGAGCACCAAAACCAAAAGGCCCTCCATCAAGTCCCTCTTTGgtgagccttttttttttttttttccctcaatttttactagaacatgataaccactgtttattctgtaaaatgtatgttacttttcataattattggtgat
- - - - AAGAAG
- - - - - AAGAAG
- - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccctc