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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGATTCCTCGAAGACATTTTCACAAAATGTTGAATTGACAGATCCAATCGTTTCTCGGTTTGATGTCCTCTGTGTTGTCAAGgttatttttctactactcttatcttttcctttacatttctatgtgttactttaagcacgggggaaacttgtttaatgcag

Basic information

species Vitis vinifera
transcript Vv01s0150g00390.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os11g29380.1 (Oryza sativa), 5'ss of exon 13
ATATGATTCCTCGAAGACATTTTCACAAAATGTTGAATTGACAGATCCAATCGTTTCTCGGTTTGATGTCCTCTGTGTTGTCAAGgttatttttctactactcttatcttttcctttacatttctatgtgttactttaagcacgggggaaacttgtttaatgcag------
||||||||| |||||||||||  | || ||||||||| |||| ||||||||  |||| || ||||||||||| |||||||| ||||||    |    ||  | ||    | |  | ||  |||  | ||  |  | |      |     |  || | |  ||||       
ATATGATTCATCGAAGACATTCACCCAGAATGTTGAACTGACGGATCCAATTATTTCACGTTTTGATGTCCTTTGTGTTGTGAAGgtt----tggagctgattttgctgtgtaatatatttttgca-gtcctggtatctatctgtactgattttttctggtgcaaatgcag

upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA17G03920.1 (Glycine max), 5'ss of exon 12
ATATGATTCCTCGAAGACATTTTCACAAAATGTTGAATTGACAGATCCAATCGTTTCTCGGTTTGATGTCCTCTGTGTTGTCAAGgttatttttctactactcttatcttttcctttacatttctatgtgt-tactttaagcacgggggaaacttgtttaatgcag
|||||||||||| || ||||| || ||||||||||||||||||||||||||  ||||||| |||||| ||||||||||||| |||||||| ||| || |    ||   | ||  ||||| | |  || ||  ||  || |    ||| |    || |||  | |||
ATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAATTATTTCTCGTTTTGATATCCTCTGTGTTGTGAAGgttatatttatatt--cattgcttctttgtttacctcttcatttgaatatatttattgagggagttctttattt--tacag

upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA07G36680.1 (Glycine max), 5'ss of exon 12
ATATGATTCCTCGAAGACATTTTCACAAAATGTTGAATTGACAGATCCAATCGTTTCTCGGTTTGATGTCCTCTGTGTTGTCAAGgttatttttctactactcttatcttttcctttacatttctatgtgttactttaagcacgggggaaacttgtttaatgcag
|||||||||||| || ||||| || ||||||||||||||||||||||||||  ||||||| |||||  |||||||||| || |||||||| |||  | |    ||   | ||  ||||| | |  || ||    ||||     | ||||    | | |  | |||
ATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAATTATTTCTCGTTTTGACATCCTCTGTGTAGTGAAGgttatatttaaatt--cattgcttctttgtttacctcttcatttgaatatttat---tgagggagttctttattttacag

upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT1G44900.2 (Arabidopsis thaliana), 5'ss of exon 11
ATATGATTCCTCGAAGACATTTTCACAAAATGTTGAATTGACAGATCCAATCGTTTCTCGGTTTGATGTCCTCTGTGTTGTCAAGgttatttttctactactcttatcttttcctt-tacatttcta--tgtgtta--ctttaagcacgggggaaacttgtttaatgcag
 |||||||| |||||  ||||| |||||||||| || ||||||||||| ||| ||||||| |||||| || | |||||||||||||| ||||||  |   ||||  |||| | |||  | ||   |   ||| |||   |||  ||    |   || |   |   |||||
GTATGATTCATCGAAATCATTTGCACAAAATGTCGAGTTGACAGATCCGATCCTTTCTCGTTTTGATATCTTGTGTGTTGTCAAGgt-attttttcaaacctctgctcttgttcttgcatatcattgattgtattaattttttggctattgaccaattatatggctgcag