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ATCAGGTTGACAACAAGAAACAATATGAACTTGATATTGACCGCATACTGCGAGGGGAGGACACCCGGACAACACTCATGATAAAGAACATTCCCAACAAgtatgtggcatttcactttgattctatttttcatagttgtatgtttcttatcgttttttataggtttgtttccagacatgcaggagagaactacttatcc...
species | Vitis vinifera |
transcript | Vv01s0150g00090.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CGAGGGGACGACACCCGGACAACACTCATGATAAAGAACATTCCCAACAA ATATACTTCAAAGATGCTTTTGGCTGCAATTGATGAAACGCCACCGGGGGAEST: gi|110429936|gb|EC996451.1|EC996451
genomic: CGAGGGGAGGACACCCGGACAACACTCATGATAAAGAACATTCCCAACAAgtatgtggca ... ataattgcagATATACTTCAAAGATGCTTTTGGCTGCAATTGATG-AACGCCACCGGGGGA
EST: CCCGGACAACACTCATGATAAAGAACATTCCCTACAA ATATACTTCAAAGATGCTTTTGGCTGCAATTGATGAACGCCACCGGGGTACEST: gi|110389267|gb|EC954091.1|EC954091
genomic: CCCGGACAACACTCATGATAAAGAACATTCCCAACAAgtatgtggca ... ataattgcagATATACTTCAAAGATGCTTTTGGCTGCAATTGATGAACGCCACCGGGGGAC
EST: CGAGGGGAGGACACCCGGACAACACTCATGATAAAGAACATTCCCAACAA ATATACTTCAAAGATGCTTTTGGCTGCAATTGATGAACGCCACCGGGGGACEST: gi|32245389|gb|CD711208.1|CD711208
genomic: CGAGGGGAGGACACCCGGACAACACTCATGATAAAGAACATTCCCAACAAgtatgtggca ... ataattgcagATATACTTCAAAGATGCTTTTGGCTGCAATTGATGAACGCCACCGGGGGAC
EST: CGGACAACACTCATGATAAAGAACATTCCCAACAA ATATACTTCAAAGATGCTTTTGGCTGCAATTGATGAACGCCACCGGGGTAC
genomic: CGGACAACACTCATGATAAAGAACATTCCCAACAAgtatgtggca ... ataattgcagATATACTTCAAAGATGCTTTTGGCTGCAATTGATGAACGCCACCGGGGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAGGTTGACAACAAGAAACAATATGAACTTGATATTGACCGCATACTGCGAGGGGAGGACACCCGGACAACACTCATGATAAAGAACATTCCCAACAAgtatgtggcatttcactttgattctatttttcatagttgtatgtttcttatcgttttttataggtttgtttccagacatgcaggagagaactacttatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagagaa