1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AGAATGCCTTTGAGATTTGACAAGGAACAGGATCTGTGGATTCTTGAGAGAGAATTGCCAgtaagtgtattttattgttctaaaattgtccaccatgttattcatttttgtgtctcactaggtgtaaaagtcttcagtcctaacattttacatttatgct...
species | Vitis vinifera |
transcript | Vv00s0250g00020.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TGAGATTTGACAAGGAACAGGATCTGTGGATTCTTGAGAGAGAATTGCCA GAAGGACACTACGAGTATAAGTACATTGTTGATGGCGAATGGACGTGTAACEST: gi|30252735|gb|CB970286.1|CB970286
genomic: TGAGATTTGACAAGGAACAGGATCTGTGGATTCTTGAGAGAGAATTGCCAgtaagtgtat ... ttattaacagGAAGGACACTACGAGTATAAGTACATTGTTGATGGCGAATGGACGTGTAAC
EST: TGAGATTTGACAAGGAACAGGATCTGTGGATTCTTGAGAGAGAATTGCCA GAAGGACACTATGAGTATAAGTACATTGTTGATGGCGAATGGACGTGTAACEST: gi|110359221|gb|EC920366.1|EC920366
genomic: TGAGATTTGACAAGGAACAGGATCTGTGGATTCTTGAGAGAGAATTGCCAgtaagtgtat ... ttattaacagGAAGGACACTACGAGTATAAGTACATTGTTGATGGCGAATGGACGTGTAAC
EST: TGAGATTTGACAAGGAACAGGATCTGTGGATTCTTGAGAGAGAATTGCCA GAAGGACACTACGAGTATAAGTACATTGTTGATGGCGAATGGACGTGTAACEST: gi|110366419|gb|EC930325.1|EC930325
genomic: TGAGATTTGACAAGGAACAGGATCTGTGGATTCTTGAGAGAGAATTGCCAgtaagtgtat ... ttattaacagGAAGGACACTACGAGTATAAGTACATTGTTGATGGCGAATGGACGTGTAAC
EST: TGAGATTTGACAAGGAACAGGATCTGTGGATTCTTGAGAGAGAATTGCCA GAAGGACACTACGAGTATAAGTACATTGTTGATGGCGAATGGACGTGTAACEST: gi|27582920|gb|CB005615.1|CB005615
genomic: TGAGATTTGACAAGGAACAGGATCTGTGGATTCTTGAGAGAGAATTGCCAgtaagtgtat ... ttattaacagGAAGGACACTACGAGTATAAGTACATTGTTGATGGCGAATGGACGTGTAAC
EST: TGAGATTTGACAAGGAACAGGATCTGTGGATTCTTGAGAGAGAATTGCCA GAAGGACACTACGAGTATAAGTACATTGTTGATGGCGAATGGACGTGTAAC
genomic: TGAGATTTGACAAGGAACAGGATCTGTGGATTCTTGAGAGAGAATTGCCAgtaagtgtat ... ttattaacagGAAGGACACTACGAGTATAAGTACATTGTTGATGGCGAATGGACGTGTAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATGCCTTTGAGATTTGACAAGGAACAGGATCTGTGGATTCTTGAGAGAGAATTGCCAgtaagtgtattttattgttctaaaattgtccaccatgttattcatttttgtgtctcactaggtgtaaaagtcttcagtcctaacattttacatttatgct
- - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaag