Sequence
atgc intronic sequence ATGC exonic sequenceCCCCATATATGGTGGCATGCAAGATTGGAACTATATACATGGTGGCTGTTTTGAATTGACACTGGAGATCAGTGACAACAAGTGGCCTAACACTATTGAGgtttgatctcagttgagttgtctttgcttcaatactcagtactattccatgtggaccaagacttgaatggtattgtgaattggttatttcctaaacaatc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os06g05240.1 (Oryza sativa), 5'ss of exon 11
CCCCATATATGGTGGCATGCAAGATTGGAACTATATACATGGTGGCTGTTTTGAATTGACACTGGAGATCAGTGACAACAAGTGGCCTAACACTATTGAGgtttgatctcagttgagttgtctttgcttcaatactcagtactattccatgtggaccaagacttgaatggtattgtgaattggtt--atttcctaaacaatc
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TCCAATCTATGGTGGGATGCAAGACTGGAACTATATACATGGAGGTTGCTTTGAGTTAACCCTGGAAATTAGTGACGTAAAATGGCCAAAGGCAGCTGAGgtatt-tttctttttttttgcatctagttatctgcctatcaat-ttccagataacttgataatcactttgttgtgttatttcttccaaattcttctatag--
upper sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G127941_T01 (Zea mays), 5'ss of exon 9
-----------------------------------------------------------------CCCCATATATGGTGGCATGCAAGATTGGAACTATATACATGGTGGCTGTTTTGAATTGACACTGGAGATCAGTGACAACAAGTGGCCTAACACTATTGAGgtttgatctcagttgagttgtctttgcttcaatactcagtactattccatgtggaccaagacttgaatggtattgtgaattggttatttcctaaacaatc
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GTACTACGTAGGTTGTGTATTTGTTGGCTTTGAATCAAACAACATCATTGCTTGTGGTCCAGgtacccaatatatggtggtatgcaagactggaactatatacatggaggctgctttgagttaactctggagattagtgacacaaagtggccaaaagcagat-------------------------------------------------------------------------------------------------------
upper sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G106683_T02 (Zea mays), 5'ss of exon 11
CCCCATATATGGTGGCATGCAAGATTGGAACTATATACATGGTGGCTGTTTTGAATTGACACTGGAGATCAGTGACAACAAGTGGCCTAACACTATTGAGgtttgatctcagttgagttgtctttgcttcaatactcagtactattccatgtggaccaagacttgaatggtattgtgaattggttatttcctaaacaatc--------
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CCCAATATATGGTGGTATGCAGGACTGGAACTATATACATGGAGGCTGCTTTGAGTTAACTCTGGAGATTAGTGACACAAAGTGGCCAAAAGCAGATGAGgt---acct---ttgcatcgagttaggttccacttctactgttgcag-acccagaccattttataattattcttctgtaatgttgtttatcctaacattttgctacag
upper sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA10G36590.1 (Glycine max), 5'ss of exon 11
CCCCATATATGGTGGCATGCAAGATTGGAACTATATACATGGTGGCTGTTTTGAATTGACACTGGAGATCAGTGACAACAAGTGGCCTAACACTATTGAGgtttgatct--cagttgagttgtctttgcttcaatactcagtactattccatgtggaccaagacttgaatggtattgtgaattgg--ttatttcctaaacaatc
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CCCTCTATATGGGGGAATGCAAGATTGGAACTATATACATGCTGGCTGTTTTGAGTTGACCCTGGAAATTAGTGATAATAAATGGCCTAATGCTGCTGAGgttagttctagcttctaaaccgagcagtctttaa-atttacaagtat---atctggaataaagcaaaataattagaacaaattacactcacatcccaagtttta
upper sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA20G31000.2 (Glycine max), 5'ss of exon 4
CCCCATATATGGTGGCATGCAAGATTGGAACTATATACATGGTGGCTGTTTTGAATTGACACTGGAGATCAGTGACAACAAGTGGCCTAACACTATTGAGgtttgatct--cagttgagttgtctttgcttcaatactcagtactattccatgtggaccaagacttgaatggtattgtgaattggttatttcctaaacaatc---
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CCCTCTATATGGGGGAATGCAAGATTGGAACTATATACATGCTGGCTGTTTTGAGTTGACCCTGGAAATTTGTGATAATAAATGGCCCAGTGCTGCTGAGgttagttctagcttctaaactgagcagtctttaaaatt----acaagtatatctggaatatagca-aaataattaggacaatttttttttttttgaacggccaaa
upper sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G71696.1 (Arabidopsis thaliana), 5'ss of exon 10
CCCCATATATGGTGGCATGCAAGATTGGAACTATATACATGGTGGCTGTTTTGAATTGACACTGGAGATCAGTGACAACAAGTGGCCTAACACTATTGAGgtttgatctcagttgagttgtctttgcttcaatactcagtactattccatgtggaccaagacttgaatggtattg-tgaattggttatttcctaaacaatc
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CCCAATTTATGGTGGCATGCAAGACTGGAATTACATATATGGGGGATGCTTTGAATTGACTCTGGAAATAAGCGACAACAAGTGGCCTAAAGCCTCAGAGgtcaaatctta-------tattcctatgt-gataactgtttctccttcgcaaggt-----agttagctgatactaatagagttcacacatgttacacag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718235|gb|FC066954.1|FC066954EST: TTGAATTGACACTGGAGATCAGTGACAACAAGTGGCCTAACACTATTGAG CTTCCTACTATATGGGAATATAACAAAATGAGTATGTTAAATCTTGTTGCA
genomic: TTGAATTGACACTGGAGATCAGTGACAACAAGTGGCCTAACACTATTGAGgtttgatctc ... aaatgtgcagCTTCCTACTATATGGGAATATAACAAAATGAGTATGTTAAATCTTGTTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCCCATATATGGTGGCATGCAAGATTGGAACTATATACATGGTGGCTGTTTTGAATTGACACTGGAGATCAGTGACAACAAGTGGCCTAACACTATTGAGgtttgatctcagttgagttgtctttgcttcaatactcagtactattccatgtggaccaagacttgaatggtattgtgaattggttatttcctaaacaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaacaa