Sequence
atgc intronic sequence ATGC exonic sequenceGGGAAGGAAGAGCTTGCAGAAGCTTTGGCAGAAGTACAAGGTGGATATTGCATTATTTGGCCATGTCCACAACTATGAAAGAATATGCCCTATTTACCAGgtacaaatccatagaaacaaaactacaccttctacaaaccatgattattcttgcaagtagtcataaagtctacatagattgtggtttaagttgcagagtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g01400.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA06G17860.1 (Glycine max), 5'ss of exon 11
GGGAAGGAAGAGCTTGCAGAAGCTTTGGCAGAAGTACAAGGTGGATATTGCATTATTTGGCCATGTCCACAACTATGAAAGAATATGCCCTATTTACCAGgtacaaatccat-------agaaacaaaactacacct---tctacaaaccatgatta--ttcttgcaagtagtcataaagtctacatagattgtggtttaagttgcagagtt-----------------------------------------------------------------
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GGGAAGGGAAAGTTTGCAGAAGCTTTGGCAAAAGTACAAAGTAGACATTGGATTTTATGGTCATGTCCATAACTATGAAAGAGTATGCCCCATTTATCAGgtatgcatatatgatagctagataccaagggggatctagctctgtgagttattgtaaattctttgttatctatcttcgattct-tacgaataaaaaaatacaatgtctagctatatatactgcttctcatttcaattcaacattgtttttttaatcatcctaatgcatgtggtacag
upper sequence: Vv17s0000g01400.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA04G37180.1 (Glycine max), 5'ss of exon 9
GGGAAGGAAGAGCTTGCAGAAGCTTTGGCAGAAGTACAAGGTGGATATTGCATTATTTGGCCATGTCCACAACTATGAAAGAATATGCCCTATTTACCAGgtacaaatccatagaaacaaaactacaccttctacaaaccatgattattcttgcaagtagtcataaagtctacatagattgtggtttaagttgcagagtt
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GGGAAGGGAAAGTTTGCAGAAGCTTTGGCAAAAGTACAAAGTAGAAATTCCATTTTATGGTCACGTCCATAACTATGAAAGAATGTGCCCCATTTATCAGgtatgcatatatgatggctag-ctagatataatgtttctcatttcaattcagcaacattatttttctaattatccaaat----gtacatgatgcag----
upper sequence: Vv17s0000g01400.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: PP1S35_126V6.1 (Physcomitrella patens), 5'ss of exon 14
GGGAAGGAAGAGCTTGCAGAAGCTTTGGCAGAAGTACAAGGTGGATATTGCATTATTTGGCCATGTCCACAACTATGAAAGAATATGCCCTATTTACCAGgtacaaatccatag-aaacaaaactacaccttctacaaaccatgattattcttgcaagtagtcataaagtctacatagattgtggtttaa-gttgcagagtt
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TGGCAGAGAGAGCTTGCAAAAGCTTTGGCAGAAATACAAAGTAGACCTTGCTTTCTATGGCCATGTGCACAACTATGAGCGAATTTGCCCTGCATATGACgtaagtgttgctggtgaattataatttgtttatttgtatttat--tttctttttctttttctttttctttttttttcttttatacattactgatgtaagatcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717460|gb|FC065597.1|FC065597EST: CATTATTTGGCCATGTCCACAACTATGAAAGAATATGCCCTATTTACCAG AATTGGTGTGTGAACCCTGAAAAATCTCACTACTCTGGCACAGTGAATGGG
genomic: CATTATTTGGCCATGTCCACAACTATGAAAGAATATGCCCTATTTACCAGgtacaaatcc ... attgatgcagAATCGGTGTGTGAACCCTGAAAAATCTCACTACTCTGGCACAGTGAATGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGAAGGAAGAGCTTGCAGAAGCTTTGGCAGAAGTACAAGGTGGATATTGCATTATTTGGCCATGTCCACAACTATGAAAGAATATGCCCTATTTACCAGgtacaaatccatagaaacaaaactacaccttctacaaaccatgattattcttgcaagtagtcataaagtctacatagattgtggtttaagttgcagagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaacca