Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCTATATATCGCTGATGCAAGACCTAGAAAAAATGCTTTAGCAAACGGAGCAATGGGAGGTGGCTCAGAGTCCTCTTCTCATTATTTTCAGTCTGAGgtctgtctatggtttgagctattctcctctcttgatcataaaatgtgacattccttacttgctaatgatctgttcttttatgtgtgatttatttttgataagattttcgttttttggtcattcatcag

Basic information

species Vitis vinifera
transcript Vv13s0074g00300.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0074g00300.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os08g44260.1 (Oryza sativa), 5'ss of exon 11
GAAGCTATATATCGCTGATGCAAGACCTAGAAAAAATGCTTTAGCAAACGGAGCAATGGGAGGTGGCTCAGAGTCCTCTTCTCATTATTTTCAGTCTGAGgtctgtctatggtttgagctattctcctctcttgatcataaaatgtgacattccttacttgctaatgatctgttcttt-tatgtgtgatttatttttgataagattttcgttttttggtcattcatcag
|||| ||||||| | ||||||  | || |||  ||||||||||||||| || |||| ||||||||||||||||||  | ||  | ||       |||||||| | |     || |    ||   |  | | |  | |||| |||      ||| ||||     ||| || | |||| | | | | ||    ||  | ||  ||                          
GAAGTTATATATAGTTGATGCCCGGCCAAGAGCAAATGCTTTAGCAAATGGTGCAAAGGGAGGTGGCTCAGAGTCAGCATCAAACTACCCAAGATCTGAGgtatattct--gtatatattaactttttttatataccatacaat------ttctttac-----aattattttttctctgtttatctgg---atcctggaccag--------------------------

upper sequence: Vv13s0074g00300.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT3G10550.1 (Arabidopsis thaliana), 5'ss of exon 11
GAAGCTATATATCGCTGATGCAAGACCTAGAAAAAATGCTTTAGCAAACGGAGCAATGGGAGGTGGCTCAGAGTCCTCTTCTCATTATTTTCAGTCTGAGgtctgtctatggtttgagctattctcctctcttgatcataaaatg-tgacattccttacttgctaatga-tctgttcttttatgtgtgatttatttttgataagattttcgttttttggtcattcatcag
|||||| ||||| ||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||| || |||||  |||||||||| ||||| ||  ||  ||||| |  |   ||    | |     || | |  |  ||  ||||| |  ||  || ||| | ||||  ||| |                                               
GAAGCTTTATATTGCTGATGCAAGACCTAGGAAAAATGCATTAGCCAATGGAGCAATGGGAGGTGGCTCAGAATCATCTTCCAATTATTTTCAATCTGAAgttagtgaatggtcttggtggtttgattattaaagtcttgatcttctggaattccatgatt-ttagtgactatgtttctttcttcag-------------------------------------------

upper sequence: Vv13s0074g00300.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT5G04540.1 (Arabidopsis thaliana), 5'ss of exon 11
GAAGCTATATATCGCTGATGCAAGACCTAGAAAAAATGCTTTAGCAAACGGAGCAATGGGAGGTGGCTCAGAGTCCTCTTCTCATTATTTTCAGTCTGAGgtctgtctatggtttgagctattctcct-ctcttgatcataaaatgtgacattccttactt--gctaatgatctgttcttttatgtgtgatttatttttgataagattttcgttttttggtcattcatcag
|||||| |||||||  |||||||||||||| |||||||| |||||||| ||||||| |||||| |||||||| || |||||  ||||||| || ||||| ||||||  ||||  | |  |  | |    |||   ||  |    | ||  | | |||  ||   || |  || | || | ||  |                                              
GAAGCTTTATATCGTAGATGCAAGACCTAGGAAAAATGCATTAGCAAATGGAGCAAAGGGAGGAGGCTCAGAATCATCTTCAAATTATTTGCAATCTGAAgtctgtacatggcctaaagtggtttggagctcaatattttgtcttctggaactgcttgttttgactgacaatgttttttcttcag----------------------------------------------