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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGAAGAATTCCAATTCATGCTTGAAGAGCCTCCTCTGAGCGAGAAGATCCATATTCAAGTAATAAGCCAGCGATCAGGAATCGGTTTTAGGTCAAAGgtattgtcatcatatttctaaatctttaattctacttccccctccctccattaagctttagctgtggaagtactgtcttcttgtag

Basic information

species Vitis vinifera
transcript Vv13s0019g04450.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04450.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA10G35410.1 (Glycine max), 5'ss of exon 11
GAATGAAGAATTCCAATTCATGCTTGAAGAGCCTCCTCTGAGCGAGAAGATCCATATTCAAGTAATAAGCCAGCGATCAGGAATCGGTTTTAGGTCAAAGgtattgtcatcatatttctaaatcttta---attctacttccccctccctccattaagctttagctgtggaagtact--gtcttcttgtag-----------
|||||||||||||||||||||||| || |||||||||||    |||||||| |||||| | || || ||| || |        |  |||||  | |||||||   ||  | || ||||| | || |||    |  || || |||||   |  |||  | |  |  | |  ||  ||   ||||| |   |            
GAATGAAGAATTCCAATTCATGCTAGAGGAGCCTCCTCTACATGAGAAGATACATATTGAGGTTATGAGCAAGAGGAAGAACTTTAGTTTTCTGCCAAAGgtgccgtt-ttatttttctcattcattataagtcatattttcccctgaataaattt-gttgaaattttacaacaaccaagtcttatcccaataggtgaagtt

upper sequence: Vv13s0019g04450.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA20G32110.1 (Glycine max), 5'ss of exon 11
GAATGAAGAATTCCAATTCATGCTTGAAGAGCCTCCTCTGAGCGAGAAGATCCATATTCAAGTAATAAGCCAGCGATCAGGAATCGGTTTTAGGTCAAAGgtattgtcatcatatttctaaatcttta-attctacttccccctccctccat-taagctttagctgtggaa-gtactgtcttcttgtag------------
|||||||||||||||||||||||| || ||||||||||     |||||||| |||||| | || || ||| || |        |  |||||  | |||||||   ||  | || ||||| | || ||| |    ||||   ||||     |  |  | |  |  | |  ||   ||  | |||    ||            
GAATGAAGAATTCCAATTCATGCTGGAGGAGCCTCCTCAACATGAGAAGATACATATTGAGGTTATGAGCAAGAGGAAGAACTTTAGTTTTCTGCCAAAGgtgccgtt-ttatttttctcattcattacaaggaactttttcctctaaataaatttgttcaaattttacaacaaaccttattccaacaggagaagccggct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|45771176|gb|CN007028.1|CN007028
EST:     TCCATATTCAAGTAATAAGCCAGCGATCAGGAATCGGTTTTAGGTCAAAG                         GAGTCAATGGGGCATGTGGACATTGATCTTACAGACGTTGTGCATAATGGG
genomic: TCCATATTCAAGTAATAAGCCAGCGATCAGGAATCGGTTTTAGGTCAAAGgtattgtcat ... cttcttgtagGAGTCAATGGGGCATGTGGACATTGATCTTACAGACGTTGTGCATAATGGG