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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTCCTCCTCCTAAGGAGAAGCCTAAAGCACCTGCACCACCACCTCCTAGACCTTCAGCTACAGAACCTGTGCTTCCTCCCAAGGAGAGGGAAAGAAGAgtaagcatcatgaacttaattatttattaaaatatacctgtaatcctgtctgttaggggttctgtaaaattactatattccacttcatttgagggagggagctggatgggggttgagtggtctgtttcttactaagttcagatcctggtgctacaatatttggaacttattcttattgcag

Basic information

species Vitis vinifera
transcript Vv10s0116g01480.t01
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34548183|gb|CF516415.1|CF516415
EST:     GACCTTCAGCTACAGAACCTGTGCTTCCTCCCAAGGAGAGGGAAAGAAGA                         GTTCCTATGACAAGATTAAGGAAACGTGTTGCAACACGTTTGAAAGATTCT
genomic: GACCTTCAGCTACAGAACCTGTGCTTCCTCCCAAGGAGAGGGAAAGAAGAgtaagcatca ... cttattgcagGTTCCTATGACAAGATTAAGGAAACGTGTTGCAACACGTTTGAAAGATTCT
EST: gi|71864219|gb|DT013274.1|DT013274
EST:     GACCTTCAGCTACAGAACCTGTGCTTCCTCCCAAGGAGAGGGAAAGAAGA                         GTTCCTATGACAAGATTAAGGAAACGTGTTGCAACACGTTTGAAAGATTCT
genomic: GACCTTCAGCTACAGAACCTGTGCTTCCTCCCAAGGAGAGGGAAAGAAGAgtaagcatca ... cttattgcagGTTCCTATGACAAGATTAAGGAAACGTGTTGCAACACGTTTGAAAGATTCT
EST: gi|71861201|gb|DT010256.1|DT010256
EST:     GACCTTCAGCTACAGAACCTGTGCTTCCTCCCAAGGAGAGGGAAAGAAGA                         GTTCCTATGACAAGATTAAGGAAACGTGTTGCAACACGTTTGAAAGATTCT
genomic: GACCTTCAGCTACAGAACCTGTGCTTCCTCCCAAGGAGAGGGAAAGAAGAgtaagcatca ... cttattgcagGTTCCTATGACAAGATTAAGGAAACGTGTTGCAACACGTTTGAAAGATTCT
EST: gi|71868220|gb|DT017275.1|DT017275
EST:     GACCTTCAGCTACAGAACCTGTGCTTCCTCCCAAGGAGAGGGAAAGAAGA                         GTTCCTATGACAAGATTAAGGAAACGTGTTGCAACACGTTTGAAAGATTCT
genomic: GACCTTCAGCTACAGAACCTGTGCTTCCTCCCAAGGAGAGGGAAAGAAGAgtaagcatca ... cttattgcagGTTCCTATGACAAGATTAAGGAAACGTGTTGCAACACGTTTGAAAGATTCT
EST: gi|37189774|gb|CF609123.1|CF609123
EST:     GACCTTCAGCTACAGAACCTGTGCTTCCTCCCAAGGAGAGGGAAAGAAGG                         GTTCCTATGACAAGATTAAGGAAACGTGTTGCAACACGTTTGAAAGATTCT
genomic: GACCTTCAGCTACAGAACCTGTGCTTCCTCCCAAGGAGAGGGAAAGAAGAgtaagcatca ... cttattgcagGTTCCTATGACAAGATTAAGGAAACGTGTTGCAACACGTTTGAAAGATTCT
EST: gi|110729049|gb|EE105210.1|EE105210
EST:     GACCTTCAGCTACAGAACCTGTGCTTCCTCCCAAGGAGAGGGAAAGAAGA                         GTTCCTATGACAAGATTAAGGAAACGTGTTGCAACACGTTTGAAAGATTCT
genomic: GACCTTCAGCTACAGAACCTGTGCTTCCTCCCAAGGAGAGGGAAAGAAGAgtaagcatca ... cttattgcagGTTCCTATGACAAGATTAAGGAAACGTGTTGCAACACGTTTGAAAGATTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACTCCTCCTCCTAAGGAGAAGCCTAAAGCACCTGCACCACCACCTCCTAGACCTTCAGCTACAGAACCTGTGCTTCCTCCCAAGGAGAGGGAAAGAAGAgtaagcatcatgaacttaattatttattaaaatatacctgtaatcctgtctgttaggggttctgtaaaattactatattccacttcatttgagggagggagctggatgggggttgagtggtctgtttcttactaagttcagatcctggtgctacaatatttggaacttattcttattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG