Sequence
atgc intronic sequence ATGC exonic sequenceACTGAAAATTGAGCTGTTAGGGGAAACTTCTATTGCATCAACAATTTCATATCTTGACAATGCATTTGTCTATGTTGGCTCAAGCTATGGAGATTCACAGgtattactaaacacaaatatctctttttgttcatttgtgaatatgtattttcagaaattatatttgaggtttatcttgttcaataatatcaactccccat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 11
ACTGAAAATTGAGCTGTTAGGGGAAACTTCTATTGCATCAACAATTTCATATCTTGACAATGCATTTGTCTATGTTGGCTCAAGCTATGGAGATTCACAGgtat--tactaaacacaaatatctctttttgttcatttgtgaatatgtattttcagaaattatatttgaggtttatcttg--ttcaataatatcaactccccat
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ACTCAAAATTGAGCCCCTTGGGGAGACTTCCATTGCATCTACAATATCATACCTTGATAATGCATTCGTCTACGTTGGTTCAAGTTATGGAGATTCACAGgtggggtaatgaactggaaaattactttata---aattttcattttgtgagatcataacatgaaagtgaattatttcccaatttctgtctccccaagtactag-
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA05G30530.1 (Glycine max), 5'ss of exon 11
ACTGAAAATTGAGCTGTTAGGGGAAACTTCTATTGCATCAACAATTTCATATCTTGACAATGCATTTGTCTATGTTGGCTCAAGCTATGGAGATTCACAGgtattactaaacacaaatatctctttttgttcatttgtgaatatgtattttcagaaattatatttgaggtttatcttgttcaataatatcaactccccat--------
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ACTCAAAATTGAGCCCCTTGGGGAGACTTCCATTGCGTCTACAATATCATACCTTGATAATGCATTCGTCTACATTGGTTCTAGTTATGGAGATTCACAGgtggggtaatgaactggaaatttactttataaattt-tggttttgtg-----agaacataacatgaaagttaattatttccaa--atttctgtctcccaagcactagt
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT4G05420.1 (Arabidopsis thaliana), 5'ss of exon 11
ACTGAAAATTGAGCTGTTAGGGGAAACTTCTATTGCATCAACAATTTCATATCTTGACAATGCATTTGTCTATGTTGGCTCAAGCTATGGAGATTCACAGgtattactaaacacaaatatctctttttgttcatttgtgaatatgtatttt-cagaaattatatttgaggtttatcttgttcaataatatcaactccccat
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CCTAAAAATTGAGCTTTTGGGTGAAACATCTATTGCATCGACTATATCGTACCTTGACAATGCCGTTGTCTTTGTCGGCTCAAGCTATGGTGATTCACAGgtatgctagaagatggttatggtctctcactatactgtttttttcaatttggtatctgtagtatgtaaa-tcgatattgttccatattttctagttgagcc
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT4G21100.1 (Arabidopsis thaliana), 5'ss of exon 11
ACTGAAAATTGAGCTGTTAGGGGAAACTTCTATTGCATCAACAATTTCATATCTTGACAATGCATTTGTCTATGTTGGCTCAAGCTATGGAGATTCACAGgtattactaaacacaaatatctctttttgttcatttgtgaatatgtattttcagaaattatatttgaggtttatcttgttcaataatatcaactccccat-----------------------------------------------------------------------------------------------
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CCTCAAAATTGAGCTTTTGGGTGAAACCTCTATTGCATCTTCCATCTCGTATCTGGACAATGCTGTCGTCTTTGTCGGTTCAAGCTATGGAGATTCACAGgtac-gctaggattgaataagtttctcattacgtgtttgaaagatatttttcttgaagaatgt---aaacttatatagttctatggttaccactatcctagttatatgtgtttcaattgttatttttcttcgagttctaataaatacaagctttgaagcatccaaacgttttcattttttactttcttattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294966440|gb|GW839547.1|GW839547EST: ATCTTGACAATGCATTTGTCTATGTTGGCTCAAGCTATGGAGATTCACAG CTCATAAAGATACATCTACAAACTGATGCCAAAGGTTCATATGTGGAGGTT
genomic: ATCTTGACAATGCATTTGTCTATGTTGGCTCAAGCTATGGAGATTCACAGgtattactaa ... tgccatgcagCTCATAAAGATACATCTACAACCTGATGCCAAAGGTTCATATGTGGAGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTGAAAATTGAGCTGTTAGGGGAAACTTCTATTGCATCAACAATTTCATATCTTGACAATGCATTTGTCTATGTTGGCTCAAGCTATGGAGATTCACAGgtattactaaacacaaatatctctttttgttcatttgtgaatatgtattttcagaaattatatttgaggtttatcttgttcaataatatcaactccccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcccca