Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggtttttattttatttttatattttttattctatataatttctaaactaatttcttgtctccagcctgaacatgtctgtccataatttcttcatg...

Basic information

species Vitis vinifera
transcript Vv10s0003g01480.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 11
AGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggtttttattttatttttatatt-ttttattctatataatttctaaactaatttcttgtctccagcctgaacatgtctgtccataatttcttcatg
 || |||||||||||| | |||||||||||||| ||||| |||||||| ||||||||||||||||||||||| || ||||| ||||| || ||||| ||||||||       |    ||||| | |   |    || |||   |  | || | | |  | |  |     || |    |||    |   |  | |       
TGACGCATGTGCACATTCCTTCTTTGATGAGCTACGAGAGCCCAATGCACGCCTGCCAAATGGTCGTCCATTCCCTCCTCTGTTCAACTTCAAGCATGAAgtaagtaaacg-agaacattttcaaacagtcgctttttatggtacatttatatttacctgtcatggat-gcttatcaatgctcatttctggtatgcag---

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os05g11730.1 (Oryza sativa), 5'ss of exon 11
AGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggtttttattttatttttatattttttat---tctatata-----atttctaaactaatttcttgtctccagcctgaacat--gt-ctgtccat-aatttcttcatg
 || ||||||||||||||||||||||||||||| ||||| || ||||| ||| ||||||| || |||||||| ||||| || ||||| || || || |||||||| |  |    |  |   | || |  |  |    |  | ||      ||   | |   ||| | |  |||||    ||  |||  || ||| |  |   | ||| ||  
TGATGCATGTGCACATCCTTTCTTTGATGAGCTGCGAGAGCCGAATGCACGCTTGCCAAACGGACGTCCATTTCCACCACTATTCAACTTCAAACACGAAgtaagtgaatcagatgaaacataatctgctacacaacttcagatcttggtatccatgagaaaatgtgtactctccttggtgctcattggtgctgccttttggtctctacag-

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA13G30060.1 (Glycine max), 5'ss of exon 11
AGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggtttttattttatttttatattttttattctatataatttctaaactaatttcttg---tctccagcctgaacatgtctgtccataatttcttcatg
 ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| || ||| | || || || ||||||||||||||   ||  ||| | ||| |  ||    | || |   |      ||||||| ||        | || |   |    ||     |  ||| | | || |  
TGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGGAAgtaagtccttaaattatctttcttcatcaaat-ttgtgctttggcagtaaactatttgtacagaatttcaaaattaggaataaa-attgatactgtttttaa-

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA15G09090.1 (Glycine max), 5'ss of exon 11
AGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggtttttatt--ttatttttatattttttattctatataatttctaaactaattt--cttgtctccagcctgaacatgtctgtccataatttcttcatg
 ||||||||||||||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||||| || ||||| || || || || |||||||||||   ||  |||   | | || ||  |  || | || |     |   | | |  |        | || ||  |    ||     |  ||| | | ||    
TGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCCATGCTCGCCTGCCAAATGGTCGTCCATTTCCTCCTCTATTTAACTTCAAACAGGAAgtaagtccttaaattacctttcttcatcatacttgtgctctggcggtaaaatatttgtacagaccatttcaagattaggaataaa-attgatactgttttt---

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA04G06760.1 (Glycine max), 5'ss of exon 11
AGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggtttttattttatttttatattttttattctatataatttctaaactaatttcttgtctccagcctgaacatgtctgtccataatttcttcatg----
 ||||||||||||||||||||||||||||| || || |||||||| || ||||||||||||||||| ||||| || ||||| || || || || |||||||||||  |  ||| |  |  | | | ||     | || | |  | |   |   ||||  ||||  | | |   ||| |  || |    |     || ||     
TGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGTGAACCCAACGCTCGCCTGCCAAATGGTCGCCCATTTCCCCCTCTATTTAACTTCAAACAGGAAgtaag--tccttaataaaactctttcttggccttact-tgtgctctggcagtaaattatttgta-ctaacacaaacttaactctaggaataaaattgatactat

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA06G06850.1 (Glycine max), 5'ss of exon 11
AGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggtttttattttatttttatattttttattctatataatttctaaactaatttcttgtctc--cagcctgaacatgtctgtccataatttcttc-atg---
 ||||||||||||||||||||||||||||| || || ||||| ||||| ||| ||||||||||||||||||| || ||||| || || || || |||||||||||   ||  |  |  || ||       | || ||   |  |||   |   ||||  ||||     ||  || ||    |  |   | ||||  ||| ||    
TGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGTGAACCTAATGCTCGCTTGCCAAATGGTCGTCCATTTCCCCCTCTATTTAACTTCAAACAGGAAgtaagtccttaaaactctttcttgg-----tcatactg-gtgctttggcagtaaattatttgtactgacaatcttaaaggctaggaataaaattgattctattttt

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA05G29200.1 (Glycine max), 5'ss of exon 10
AGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggtttttattttatttttatattttttattctatat----aatttctaaa---ctaatttcttgtctccagcctgaacatgtctgtccataatttcttcatg--------------------------------------------------------------------------
||||||||||||||| || ||||||||||| ||||| ||||||||||| | | ||||| ||||||||||||| || ||||| ||||| ||||| || || || || ||   |   | || ||  ||  | | | |  |  |    ||  ||||||   |  |      |  |  |   | || ||   ||   | |  ||| | |||                                                                          
AGAAGCATGTGCACACCCATTCTTTGATGAACTCCGTGAACCCAATGCTCACTTGCCAGATGGTCGTCCATTTCCCCCTCTATTCAACTTTAAACAAGAGgtgagtgtggctgcatcatcttcttagctatgaatgaaggttacaaaaatctaaatgccctacaatacgattttatgatcaagattcttgat-acagcttcattatgaatatatccatgatctgatattcagtaagtaccttgtttagggtctattacatgtttatgttctatgtttacag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA08G12370.1 (Glycine max), 5'ss of exon 11
AGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggtttttattttatttttatattttttattctatat----aatttctaaactaatttcttgtctccagcctgaacatgtctgtccata-atttcttcatg-----------------------------------------------------------------------------
|||||||||||| || || ||||||||||| ||||| ||||||||||| | | ||||| ||||||||||||| || ||||| ||||| || || || || || || ||   |   |  | ||  ||  | | | |  |  |    ||  ||||||     | |    |       |||||| |  | |  ||| |   ||||||                                                                              
AGAAGCATGTGCTCACCCATTCTTTGATGAACTCCGTGAACCCAATGCTCACTTGCCAGATGGTCGTCCATTTCCCCCTCTATTCAACTTAAAACAAGAGgtgagtgtggctgcatcgtcttcttagctatgaatgaaggttacaaaaatctaaatgccctacaatacaattttatgaacaagattcttgatagacagcttcattatgaatatatccatgatctgatattcactaagtaccttgtttagggtctattacatgtttatgttctatgtttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351045705|gb|FQ440890.1|FQ440890
EST:     GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|110398418|gb|EC964768.1|EC964768
EST:     GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|30300367|gb|CB977161.1|CB977161
EST:     GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|110370230|gb|EC929161.1|EC929161
EST:     GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|32246125|gb|CD711944.1|CD711944
EST:     GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATTTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|110716958|gb|EE092396.1|EE092396
EST:     GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|22012531|gb|BQ797565.1|BQ797565
EST:     GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|71881645|gb|DT030700.1|DT030700
EST:     GTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|71882430|gb|DT031485.1|DT031485
EST:     GCTTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|27583598|gb|CB006293.1|CB006293
EST:     GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|352765117|gb|FQ465814.1|FQ465814
EST:     GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|30255804|gb|CB971936.1|CB971936
EST:     TCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: TCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|71888191|gb|DT037246.1|DT037246
EST:     GCTTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|45368328|gb|CK906687.1|CK906687
EST:     GCTTG-CAAATGGTCGTCCATT-CCACCTCTCTTC-ATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|71889601|gb|DT038656.1|DT038656
EST:     GCTTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|30137899|gb|CB923237.1|CB923237
EST:     ATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: ATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|110405706|gb|EC971253.1|EC971253
EST:     GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|71874759|gb|DT023814.1|DT023814
EST:     GCTTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|34546636|gb|CF514868.1|CF514868
EST:     GCTTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|83275330|gb|DV938481.1|DV938481
EST:     GCTTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|71887350|gb|DT036405.1|DT036405
EST:     GCTTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|45771628|gb|CN007480.1|CN007480
EST:     CCACCTCTCTTCAA-TTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: CCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|352794802|gb|FQ475297.1|FQ475297
EST:     TCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTTTCTTGAGCTTGTTAATAAGTTGATACCGGGGCATGTG
genomic: TCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|71889298|gb|DT038353.1|DT038353
EST:     GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|71888654|gb|DT037709.1|DT037709
EST:     GCTTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|33410048|gb|CF215675.1|CF215675
EST:     GGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|351044685|gb|FQ443216.1|FQ443216
EST:     GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|349814811|gb|FQ410034.1|FQ410034
EST:     GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTA-GCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGT
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGT
EST: gi|110727667|gb|EE104690.1|EE104690
EST:     GCTTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAAGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|56408265|gb|CX016517.1|CX016517
EST:     GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|27582218|gb|CB004913.1|CB004913
EST:     GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|351014090|gb|FQ434242.1|FQ434242
EST:     GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|71883314|gb|DT032369.1|DT032369
EST:     GCTTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|110697341|gb|EE074243.1|EE074243
EST:     CCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: CCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|351046670|gb|FQ453286.1|FQ453286
EST:     CCTGCCAAATGGTCGTCCATTACCACCTCTCTTTCA-TTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCT
genomic: CCTGCCAAATGGTCGTCCATTACCACCTCTCTT-CAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCT
EST: gi|34546815|gb|CF515047.1|CF515047
EST:     GCTTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|33409976|gb|CF215603.1|CF215603
EST:     TACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCGAT-GGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATG
genomic: TACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATC--TGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATG
EST: gi|71885864|gb|DT034919.1|DT034919
EST:     GCTTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|71885157|gb|DT034212.1|DT034212
EST:     GCTTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
EST: gi|110428134|gb|EC994596.1|EC994596
EST:     GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAA                         TTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG
genomic: GCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggttt ... tgattcacagTTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggtttttattttatttttatattttttattctatataatttctaaactaatttcttgtctccagcctgaacatgtctgtccataatttcttcatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa