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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgattcaatctgtgtctggatctgtacctctttctctctctctctcatgtttgattcacatgtttttttatttgtctatgtcag

Basic information

species Vitis vinifera
transcript Vv07s0151g00870.t01
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110396954|gb|EC962662.1|EC962662
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110422753|gb|EC989083.1|EC989083
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110695917|gb|EE074478.1|EE074478
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110401398|gb|EC968008.1|EC968008
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110716948|gb|EE092386.1|EE092386
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110427747|gb|EC994197.1|EC994197
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110418336|gb|EC984483.1|EC984483
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110703206|gb|EE079847.1|EE079847
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110706176|gb|EE083859.1|EE083859
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110715187|gb|EE092948.1|EE092948
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110429102|gb|EC995590.1|EC995590
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110686957|gb|EE063949.1|EE063949
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110686398|gb|EE063990.1|EE063990
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110426519|gb|EC992932.1|EC992932
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110706212|gb|EE081539.1|EE081539
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110701480|gb|EE079100.1|EE079100
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|30134618|gb|CB919956.1|CB919956
EST:     ACGAACAGCTTCGCAGAGCGTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGC-TTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|87586595|gb|DY474808.1|DY474808
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110380839|gb|EC946135.1|EC946135
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|30129040|gb|CB914379.1|CB914379
EST:     CAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: CAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110688898|gb|EE067978.1|EE067978
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110376910|gb|EC941983.1|EC941983
EST:     ACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110724006|gb|EE099466.1|EE099466
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110400716|gb|EC967291.1|EC967291
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110409350|gb|EC975011.1|EC975011
EST:     CAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: CAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110697220|gb|EE074017.1|EE074017
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110687995|gb|EE066043.1|EE066043
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAAAACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
EST: gi|110429849|gb|EC996360.1|EC996360
EST:     ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATG                         TCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG
genomic: ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgatt ... tctatgtcagTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGgtgagtgattcaatctgtgtctggatctgtacctctttctctctctctctcatgtttgattcacatgtttttttatttgtctatgtcag

- - - - - - - AGAGCT
- - - - - - -  GAGCTT