Sequence
atgc intronic sequence ATGC exonic sequenceGCTGTTGATTATCCTCAGAGGAGATACAGAATAGTTCTTAGAAGCTCAATGGGCCCTATAGATGTTTACCTTGTCAGgtattgttgccttttggttacaacacctgttttctatttgcaggcacgggataaccattattcttatttggaagtaaggatgataaactatttgagacaggctattctgttctgatgccttgtcttttcattctcttaatttttcttgatattggtttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0080g01110.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA11G18400.1 (Glycine max), 5'ss of exon 7
GCTGTTGATTATCCTCAGAGGAGATACAGAATAGTTCTTAGAAGCTCAATGGGCCCTATAGATGTTTACCTTGTCAGgtattgttgccttttggttacaacacctgttttctatttgcaggcacgggataaccattattcttatttggaagtaaggatgataaactatttgagacaggctattctgttctgatgccttgtcttttcattctcttaatttttcttgatattggtttag
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GCTGTTGATTATCCGCAGAGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCAATAGATCTTTACCTTGTTAGgtattttt-tttcatggttctaaagtcatttacctaaagg-gtttatgatcagatgacaatgctagat--gagacaatggtgcttcacaatt-gcaacatgtaataaattcaggattcctgacctctccttttttctttgccattttag-----------
upper sequence: Vv06s0080g01110.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA12G09860.1 (Glycine max), 5'ss of exon 11
GCTGTTGATTATCCTCAGAGGAGATACAGAATAGTTCTTAGAAGCTCAATGGGCCCTATAGATGTTTACCTTGTCAGgtattgttgccttttggttacaacacctgttttctatttgcaggcacgggataaccattattcttatttggaagtaaggatgataaactatttgagacaggctattctgttctgatgccttgtcttttcattctcttaatttttcttgatattggtttag
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GCCGTTGATTATCTGCAGAGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCAATAGATCTTTACCTTGTTAGgtattttt---ttatggttctaaaatcatttacct---caagggtttataattgcaatggcttcacaattgcagcatg--tcataaatt--------caggat-tcctgacctctccttttctctctctgccattttag---------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690767|gb|EC957498.1|EC957498EST: AGAATAGTTCTTAGAAGCTCAATGGGCCCTATAGATGTTTACCTTGTCAG TCAATTTGAAGAGAAGTTTGAGGAGATTAATGGTCTTGAGGCACCTCCAAG
genomic: AGAATAGTTCTTAGAAGCTCAATGGGCCCTATAGATGTTTACCTTGTCAGgtattgttgc ... attggtttagTCAATTTGAAGAGAAGTTTGAGGAGATTAATGGTCTTGAGGCACCTCCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGTTGATTATCCTCAGAGGAGATACAGAATAGTTCTTAGAAGCTCAATGGGCCCTATAGATGTTTACCTTGTCAGgtattgttgccttttggttacaacacctgttttctatttgcaggcacgggataaccattattcttatttggaagtaaggatgataaactatttgagacaggctattctgttctgatgccttgtcttttcattctcttaatttttcttgatattggtttag
- - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - AGCTCA