1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CAAGGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTATAGgtgcatctctttatttgatctctcttaattcttcctcttgttttatttgtttccctcttttctgatagaaactgctaaactggctctttatttgtccagactccttatgacttatgagttctgaaacctgatgtgatctttttgcttctgctttttttttttttttag
species | Vitis vinifera |
transcript | Vv06s0004g03940.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTATAG CATGCCGAAAGACGAAGCCCAATTATATGCTGCAAATGAACTEST: gi|34361715|gb|CF403300.1|CF403300
genomic: GGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTATAGgtgcatctct ... ttttttttagCATGCCGAAAGACGAAGCCCAATTATATGCTGCAAATGAACT
EST: GGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTATAG CATGCCGAAAGACGAAGCCCAATTATATGCTGCAAATGAACTEST: gi|110429086|gb|EC995574.1|EC995574
genomic: GGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTATAGgtgcatctct ... ttttttttagCATGCCGAAAGACGAAGCCCAATTATATGCTGCAAATGAACT
EST: ATTTTCTATAG CATGCCGAAAGACGAAGCCCAATTATATGCTGCAAATGAACTEST: gi|110361031|gb|EC924481.1|EC924481
genomic: ATTTTCTATAGgtgcatctct ... ttttttttagCATGCCGAAAGACGAAGCCCAATTATATGCTGCAAATGAACT
EST: GGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTATAG CATGCCGAAAGACGAAGCCCAATTATATGCTGCAAATGAACTEST: gi|110414858|gb|EC980718.1|EC980718
genomic: GGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTATAGgtgcatctct ... ttttttttagCATGCCGAAAGACGAAGCCCAATTATATGCTGCAAATGAACT
EST: GGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTATAG CATGCCGAAAGACGAAGCCCAATTATATGCTGCAAATGAACTEST: gi|110715851|gb|EE094372.1|EE094372
genomic: GGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTATAGgtgcatctct ... ttttttttagCATGCCGAAAGACGAAGCCCAATTATATGCTGCAAATGAACT
EST: GGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTATAG CATGCCGAAAGACGAAGCCCAATTATATGCTGCAAATGAACTEST: gi|110719513|gb|EE094707.1|EE094707
genomic: GGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTATAGgtgcatctct ... ttttttttagCATGCCGAAAGACGAAGCCCAATTATATGCTGCAAATGAACT
EST: GGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTATAG CATGCCGAAAGACGAAGCCCCATTA
genomic: GGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTATAGgtgcatctct ... ttttttttagCATGCCGAAAGACGAAGCCCAATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTATAGgtgcatctctttatttgatctctcttaattcttcctcttgttttatttgtttccctcttttctgatagaaactgctaaactggctctttatttgtccagactccttatgacttatgagttctgaaacctgatgtgatctttttgcttctgctttttttttttttttag
- - - - - - TTGAAG
- - - - - - - - - - - GGTGGA
- - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - TGGAGA