1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCTTCTTCACAAATACGTGGGTGATTTCCTCTCCACCAGTTGCATCACTCCCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAGgtttgtttttgaactttgttctatccattatcttatgtgatcagattacttattcgaagtccatgattggttgttag
species | Vitis vinifera |
transcript | Vv00s0389g00020.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAG GCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACTGATCACEST: gi|34548572|gb|CF516804.1|CF516804
genomic: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAGgtttgttttt ... tggttgttagGCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCAC
EST: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAG GCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACTGATCACEST: gi|33403015|gb|CF208642.1|CF208642
genomic: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAGgtttgttttt ... tggttgttagGCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCAC
EST: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAG GCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCACEST: gi|32460469|gb|CD801643.1|CD801643
genomic: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAGgtttgttttt ... tggttgttagGCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCAC
EST: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAG GCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCACEST: gi|110416873|gb|EC982881.1|EC982881
genomic: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAGgtttgttttt ... tggttgttagGCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCAC
EST: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAG GCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACTGATCACEST: gi|110403052|gb|EC964143.1|EC964143
genomic: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAGgtttgttttt ... tggttgttagGCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCAC
EST: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAG GCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACTGATCACEST: gi|34548486|gb|CF516718.1|CF516718
genomic: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAGgtttgttttt ... tggttgttagGCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCAC
EST: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAG GCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACTGATCACEST: gi|27579018|gb|CB001713.1|CB001713
genomic: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAGgtttgttttt ... tggttgttagGCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCAC
EST: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAG GCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCACEST: gi|30252205|gb|CB969756.1|CB969756
genomic: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAGgtttgttttt ... tggttgttagGCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCAC
EST: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAG GCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCACEST: gi|30252118|gb|CB968757.1|CB968757
genomic: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAGgtttgttttt ... tggttgttagGCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCAC
EST: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAG GCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCACEST: gi|27581522|gb|CB004217.1|CB004217
genomic: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAGgtttgttttt ... tggttgttagGCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCAC
EST: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAG GCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCACEST: gi|32460375|gb|CD801549.1|CD801549
genomic: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAGgtttgttttt ... tggttgttagGCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCAC
EST: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAG GCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCACEST: gi|27581734|gb|CB004429.1|CB004429
genomic: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAGgtttgttttt ... tggttgttagGCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCAC
EST: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAG GCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCACEST: gi|110389639|gb|EC954494.1|EC954494
genomic: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAGgtttgttttt ... tggttgttagGCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCAC
EST: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAG GCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCACEST: gi|33402926|gb|CF208553.1|CF208553
genomic: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAGgtttgttttt ... tggttgttagGCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCAC
EST: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAG GCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCACEST: gi|110380755|gb|EC946046.1|EC946046
genomic: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAGgtttgttttt ... tggttgttagGCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCAC
EST: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAG GCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCAC
genomic: CCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAGgtttgttttt ... tggttgttagGCCCGTCCAAATGCCATTGCCCTTGTTGATGCATTTAACTACACCGATCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTCTTCACAAATACGTGGGTGATTTCCTCTCCACCAGTTGCATCACTCCCAAGCAAGCATCACTTGCAAATGAGCAGCTCAGATCCCTATATGCCCAGgtttgtttttgaactttgttctatccattatcttatgtgatcagattacttattcgaagtccatgattggttgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA