1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCAAGCTGATAGAAGAAATTATGATTGGTGAGGACAAATTGATCCATTTTTCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAGgtagactttgacatctttgctttttcattttaacttttcctgttcaaatatgttttcttctgcagtcttgcaatataactgctaacatattttaccatgt...
species | Vitis vinifera |
transcript | Vv18s0001g00480.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAG CTTTCATGTGTTGGATGAGGCAGAAAGGTCTCTGCATGATGCCTTGTGTGTEST: gi|33404923|gb|CF210550.1|CF210550
genomic: TCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAGgtagactttg ... tttttggcagCTTTCATGTGTTGGATGAGGCAGAAAGGTCTCTGCATGATGCCTTGTGTGT
EST: TCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAG CTTTCATGTGTTGGATGAGGCAGAAAGGTCTCTGCACGATGCCTTGTGTGTEST: gi|110361054|gb|EC924506.1|EC924506
genomic: TCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAGgtagactttg ... tttttggcagCTTTCATGTGTTGGATGAGGCAGAAAGGTCTCTGCATGATGCCTTGTGTGT
EST: TCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAG CTTTCATGTGTTGGATGAGGCAGAAAGGTCTCTGCATGATGCCTTGTGTGTEST: gi|34544937|gb|CF513169.1|CF513169
genomic: TCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAGgtagactttg ... tttttggcagCTTTCATGTGTTGGATGAGGCAGAAAGGTCTCTGCATGATGCCTTGTGTGT
EST: TCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAG CTTTCATGTGTTGGATGAGGCAGAAAGGTCTCTGCATGATGCCTTGTGTGTEST: gi|351026682|gb|FQ436335.1|FQ436335
genomic: TCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAGgtagactttg ... tttttggcagCTTTCATGTGTTGGATGAGGCAGAAAGGTCTCTGCATGATGCCTTGTGTGT
EST: TCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAG CTTTCATGTGTTGGATGAGGCAGAAAGGTCTCTGCATGATGCCTTGTGTGTEST: gi|110728449|gb|EE104025.1|EE104025
genomic: TCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAGgtagactttg ... tttttggcagCTTTCATGTGTTGGATGAGGCAGAAAGGTCTCTGCATGATGCCTTGTGTGT
EST: TCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAG CTTTCATGTGTTGGATGAGGCAGAAAGGTCTCTGCATGATGCCTTGTGTGTEST: gi|351017182|gb|FQ424611.1|FQ424611
genomic: TCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAGgtagactttg ... tttttggcagCTTTCATGTGTTGGATGAGGCAGAAAGGTCTCTGCATGATGCCTTGTGTGT
EST: TCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAG CTTTCATGTGTTGGATGAGGCAGAAAGGTCTCTGCATGATGCCTTGTGTGTEST: gi|34543743|gb|CF511975.1|CF511975
genomic: TCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAGgtagactttg ... tttttggcagCTTTCATGTGTTGGATGAGGCAGAAAGGTCTCTGCATGATGCCTTGTGTGT
EST: TCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAG CTTTCATGTGTTGGATGAGGCAGAAAGGTCTCTGCATGATGCCTTGTGTGTEST: gi|351015108|gb|FQ444397.1|FQ444397
genomic: TCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAGgtagactttg ... tttttggcagCTTTCATGTGTTGGATGAGGCAGAAAGGTCTCTGCATGATGCCTTGTGTGT
EST: TCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAG CTTTCATGTGTTGGATGAGGCAGAAAGGTCTCTGCATGATGCCTTGTGTGT
genomic: TCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAGgtagactttg ... tttttggcagCTTTCATGTGTTGGATGAGGCAGAAAGGTCTCTGCATGATGCCTTGTGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGCTGATAGAAGAAATTATGATTGGTGAGGACAAATTGATCCATTTTTCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAGgtagactttgacatctttgctttttcattttaacttttcctgttcaaatatgttttcttctgcagtcttgcaatataactgctaacatattttaccatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG