Sequence
atgc intronic sequence ATGC exonic sequenceACCGGGCTTGTAAGACATGCAACAAGAAAGTCACAGATGCTATTGGATCTGGGTATTGGTGTGAAGGATGCCAAAAGAATGATGATGAGTGCAGTTTAAGgtgagggattcatggaatttgaatcaataagaatccagcgatagtagttgaaattcatgaaagttgtcctatgaatgatgtttttttgttccattctgttttgttttccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g07440.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os03g11540.1 (Oryza sativa), 5'ss of exon 10
ACCGGGCTTGTAAGACATGCAACAAGAAAGTCACAGATGCTATTGGATCTGGGTATTGGTGTGAAGGATGCCAAAAGAATGATGATGAGTGCAGTTTAAGgtgagggattcatggaatttgaatcaataagaatccagcgatagtagttgaaattcatgaaagttgtcctatgaatgatgtttttttgttccattctgttttgttttccag
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ACCGAGCTTGCAAGACCTGCAACAAGAAGGTGACTGAGGCAATTGGATCAGGATACTGGTGTGAAGGGTGCCAGAAGAATGATGCTGAGTGCTCACTGAGgtaaaactttgggctgaattacaccgtgcatgcttgaatttgagatgatacaaagc-caaagctaatgctac-actg--gttcctttcttcag------------------
upper sequence: Vv17s0000g07440.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G098714_T01 (Zea mays), 5'ss of exon 10
ACCGGGCTTGTAAGACATGCAACAAGAAAGTCACAGATGCTATTGGATCTGGGTATTGGTGTGAAGGATGCCAAAAGAATGATGATGAGTGCAGTTTAAGgtgagggattcatggaatttgaatcaataagaatccagcgatagtagttgaaattcatgaaagttgtcctatgaatgatg-tttttttgttccattctgttttgttttccag
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ACCGTGCTTGCAAGACCTGCAACAAGAAGGTGACTGAAACTTTTGGATCTGGATACTGGTGTGAGGGATGCCAAAAGAATGACTCGGAATGCTCACTGAGgtaaaaaa-----aaaatc---gtcagcagaagcctgctgctactg--------ttatctatttggtgccaaatctgacggtttccctgcgtccttcag-------------
upper sequence: Vv17s0000g07440.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT5G61000.1 (Arabidopsis thaliana), 5'ss of exon 9
ACCGGGCTTGTAAGACATGCAACAAGAAAGTCACAGATGCTATTGGATCTGGGTATTGGTGTGAAGGATGCCAAAAGAATGATGATGAGTGCAGTTTAAGgtgagggattcatggaatttgaatcaataa--gaatccagcgatagtagttgaaattcatgaaagttgtcctatgaatgatgtttttttgttccattctgttttgttttccag
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ACCAAGCTTGTAAGACTTGTAACAAGAAAGTGACAGAAGCACTTGACTCTGGTTACTGGTGTGAAGGATGCCAGAGAAAGTATGAAGAATGCAGCTTAAGgtaagagag--atactcttttgattcataatcaaacttggttataatctttacttcctttctccgacatcttacaaatctgtccactttggttgtcgctag------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33408787|gb|CF214414.1|CF214414EST: GGGTATTGGTGTGAAGGATGCCAAAAGAATGATGATGAGTGCAGTTTAAG GTACATAATGGTAGTGAAAGTTTCAGATGCTAGTGGTGAAGCTTGGCTTTC
genomic: GGGTATTGGTGTGAAGGATGCCAAAAGAATGATGATGAGTGCAGTTTAAGgtgagggatt ... tgttttccagGTACATAATGGTAGTGAAAGTTTCAGATGCTAGTGGTGAAGCTTGGCTTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACCGGGCTTGTAAGACATGCAACAAGAAAGTCACAGATGCTATTGGATCTGGGTATTGGTGTGAAGGATGCCAAAAGAATGATGATGAGTGCAGTTTAAGgtgagggattcatggaatttgaatcaataagaatccagcgatagtagttgaaattcatgaaagttgtcctatgaatgatgtttttttgttccattctgttttgttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA