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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAGATGCTGTTGGATCTACACGAAAGCAATGGGAAGGCCATACAAAAAAAACATTGCACCAACTGCTTGTTGAAATGGATGGTTTTGAACAGAATGAGgtaacatatggacaaacttgtgttattagtgaatatttttctgcatttttttaacttggataatatttttcttgtag

Basic information

species Vitis vinifera
transcript Vv16s0050g02630.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g02630.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os01g43150.2 (Oryza sativa), 5'ss of exon 2
AATAGATGCTGTTGGATCTACACGAAAGCAATGGGAAGGCCATACAAAAAAAACATTGCACCAACTGCTTGTTGAAATGGATGGTTTTGAACAGAATGAGgtaacatatggacaaacttgtgttattagtgaatatttttctgcatttt-tttaacttggataa--tatttttcttgtag
|||||||||||| || || ||  |||| || |||||||| || ||||| ||||||||||| ||||| ||||| || ||||||||||||||||| ||||||||||| |    ||| | ||     |  |||  ||        | | ||| | ||| |||  |    ||||  | ||| ||
AATAGATGCTGTGGGTTCAACTAGAAAACAGTGGGAAGGACACACAAAGAAAACATTGCATCAACTTCTTGTCGAGATGGATGGTTTTGAACAAAATGAGgtaaccttatcacatattt-----aacagtccatcacacagaggactttatgtaaattgtgttttctattgattttgcag

upper sequence: Vv16s0050g02630.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA14G29810.1 (Glycine max), 5'ss of exon 2
AATAGATGCTGTTGGATCTACACGAAAGCAATGGGAAGGCCATACAAAAAAAACATTGCACCAACTGCTTGTTGAAATGGATGGTTTTGAACAGAATGAGgtaacatatggacaaacttgtgttattagtgaatatttttctgcatttttttaacttggataatatttt-tcttgtag
||| |||||||||||||| ||| |||| |||||||| ||||| ||||| || |||||||| || || ||||||||||||||||| ||||| |||||||||||| | | || |||   |||   |   | |     ||  ||||  ||||   || |     | |||||| ||||||||
AATTGATGCTGTTGGATCAACAAGAAAACAATGGGAGGGCCACACAAAGAAGACATTGCATCAGCTACTTGTTGAAATGGATGGGTTTGAGCAGAATGAGgtatctt-tgaacag-tttggagtgcaatt---cgttcctctg-gttttagaaattgattcattattttatcttgtag

upper sequence: Vv16s0050g02630.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA13G08160.1 (Glycine max), 5'ss of exon 10
AATAGATGCTGTTGGATCTACACGAAAGCAATGGGAAGGCCATACAAAAAAAACATTGCACCAACTGCTTGTTGAAATGGATGGTTTTGAACAGAATGAGgtaacatatggacaaacttgtgttattagtgaatatttttctgcatttttttaacttggataatatttt-tcttgtag
||| |||||||||||||| ||| |||| |||||||| ||||| ||||| || |||||||| || || ||||||||||||||||| ||||| |||||||||||| | | || |||  ||||   |   | |   | ||  ||||  ||||   || |     | |||||| |||| |||
AATTGATGCTGTTGGATCAACAAGAAAACAATGGGAGGGCCACACAAAGAAGACATTGCATCAGCTACTTGTTGAAATGGATGGGTTTGAGCAGAATGAGgtatctt-tgaacag-cttggagtgcaatt---tgttcctctg-gttttagaaattgattcattattttatcttctag

upper sequence: Vv16s0050g02630.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA06G13140.1 (Glycine max), 5'ss of exon 10
AATAGATGCTGTTGGATCTACACGAAAGCAATGGGAAGGCCATACAAAAAAAACATTGCACCAACTGCTTGTTGAAATGGATGGTTTTGAACAGAATGAGgtaacatatggac---aaacttgtgttattagtgaat-atttttctgcatttttttaacttggataatattttt--cttgtag
||||||||||||||| || ||  | || ||||||||||| |||||||| || |||||||||||||| ||||||||||||||||| ||||| |||||||| |||   |         |||| | ||| | |  | ||| | |||    |  |||  ||| ||    || || |||  |||||||
AATAGATGCTGTTGGTTCAACTAGGAAACAATGGGAAGGTCATACAAAGAAGACATTGCACCAACTACTTGTTGAAATGGATGGATTTGAGCAGAATGAAgtatatttcaagttttaaacatttgtgagtgtttaattagtttctctctgtttcctaatttattcaacatctttatcttgtag

upper sequence: Vv16s0050g02630.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT5G53170.1 (Arabidopsis thaliana), 5'ss of exon 10
AATAGATGCTGTTGGATCTACACGAAAGCAATGGGAAGGCCATACAAAAAAAACATTGCACCAACTGCTTGTTGAAATGGATGGTTTTGAACAGAATGAGgtaacatatggacaa-acttgtgttattagtgaatatttttctgcatttttttaacttggataatatttttcttgtag--------------
||| |||||||||||||| ||| |||| ||||||||||| |||||||| || |||||||| ||||| ||||||||||||||||||||||| ||||||||||||     ||   |  | | ||||   | |||| || ||       |||     | |   ||| || ||| |||                  
AATTGATGCTGTTGGATCCACAAGAAAACAATGGGAAGGGCATACAAAGAAGACATTGCATCAACTACTTGTTGAAATGGATGGTTTTGAGCAGAATGAGgtacttgttgattaggagtagtgtatcttgtgattacttccgctagtttgcaggaatataatagtactttgctttctattttggttatgcag