1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGATTAGCAAACTTCGGAAAGAAGCAGAAAGTGAAAACCAGGAGATTGCCCGATTACAATATGAGCTGGAGGTTGAGAGGAAAGCCTTGTCTATGGCCAGgtaagaatcatgttttaaaaggctaaaggtggtcttgaggcattttgtttaaacgaggcaaggcataagtcttaacttaagaataaaaagtactaataga...
species | Vitis vinifera |
transcript | Vv16s0050g00600.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CGATTACAATATGAGCTGGAGGTTGAGAGGAAAGCCTTGTCTATGGCCAG GGCTTGGGCTGAGGATGAGGCAAAAAGAGCAAGAGAACAAGCAAAAGCCCTEST: gi|110689004|gb|EE067895.1|EE067895
genomic: CGATTACAATATGAGCTGGAGGTTGAGAGGAAAGCCTTGTCTATGGCCAGgtaagaatca ... tgttatctagGGCTTGGGCTGAGGATGAGGCAAAAAGGGCAAGAGAACAAGCAAAAGCCCT
EST: CGATTACAATATGAGCTGGAGGTTGAGAGGAAAGCCTTGTCTATGGCCAG GGCTTGGGCTGAGGATGAGGCAAAAAGGGCAAGAGAACAAGCAAAAGCCCTEST: gi|110700815|gb|EE077801.1|EE077801
genomic: CGATTACAATATGAGCTGGAGGTTGAGAGGAAAGCCTTGTCTATGGCCAGgtaagaatca ... tgttatctagGGCTTGGGCTGAGGATGAGGCAAAAAGGGCAAGAGAACAAGCAAAAGCCCT
EST: CGATTACAATATGAGCTGGAGGTTGAGAGGAAAGCCTTGTCTATGGCCAG GGCTTGGGCTGAAGATGAAGCAAATATGGCAAGAGAACAACCAAA-GCCCT
genomic: CGATTACAATATGAGCTGGAGGTTGAGAGGAAAGCCTTGTCTATGGCCAGgtaagaatca ... tgttatctagGGCTTGGGCTGAGGATGAGGCAAAAAGGGCAAGAGAACAAGCAAAAGCCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATTAGCAAACTTCGGAAAGAAGCAGAAAGTGAAAACCAGGAGATTGCCCGATTACAATATGAGCTGGAGGTTGAGAGGAAAGCCTTGTCTATGGCCAGgtaagaatcatgttttaaaaggctaaaggtggtcttgaggcattttgtttaaacgaggcaaggcataagtcttaacttaagaataaaaagtactaataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaggcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa