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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGTTGCGGTATTACATCTAGAAGAAAGGTGTGAACGAGCAATTGAATGGGCATTAAAGATTGAGCCTTCCATAAAACATTTGgtgagtggtgacatgaactgcagtttcccaactttttcaccacacctcattcagcacatccttttgtctgcttctttggactgtattattttggagtctgccatacccatcattgtgttctgccttctctag

Basic information

species Vitis vinifera
transcript Vv15s0048g00390.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g00390.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os12g29990.1 (Oryza sativa), 5'ss of exon 10
CGAGTTGCGGTATTACATCTAGAAGAAAGGTGTGAACGAGCAATTGAATGGGCATTAAAGATTGAGCCTTCCATAAAACATTTGgtgagtggtgacatgaactgcagtttcccaactttttcaccacacctcattcagcacatccttttgtctgcttctttg--gactgtattattttggagtctgccatacccatcattgtgttctgccttctctag
|||||||| || |||||| | |||||||| ||  | |||||| ||||||||||||| ||||| |||||||| || ||| | || || | |    | ||    ||  |||     | |||   |  | |  |   |    ||||   ||  ||   |   ||   ||||   |||||   |                                      
CGAGTTGCTGTTTTACATTTGGAAGAAAGATGCCAGCGAGCAGTTGAATGGGCATTGAAGATGGAGCCTTCTATTAAATACTTTgtaattc---agatatcttgatgttgattcatttt---agaatatttacatttttacattagttcatccagtgtgttattgactcagttattaaag--------------------------------------

upper sequence: Vv15s0048g00390.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G420055_T01 (Zea mays), 5'ss of exon 7
CGAGTTGCGGTATTACATCTAGAAGAAAGGTGTGAACGAGCAATTGAATGGGCATTAAAGATTGAGCCTTCCATAAAACATTTGgtgagt--ggtgacatga--actgcagtttcccaactttttcaccacacctcattcagcacatccttttgtctgcttctttggactgtattattttggagtctgccatacccatcattgtgttctgccttctctag
|||||||| || |||||| | |||||||||||||| |||||| ||||||||||||| || || || |||||||| ||| | || || | |  | |  | |||  |  |    || | ||    || ||      |||| |||    |    || ||   || |    |                                                    
CGAGTTGCTGTGTTACATTTGGAAGAAAGGTGTGAGCGAGCAGTTGAATGGGCATTGAATATGGAACCTTCCATCAAATACTTTgtaactcagatatcttgacgatggttaatttcaaatcggtttac------tcatccagtg--ttgacttatccaattataaaaag---------------------------------------------------

upper sequence: Vv15s0048g00390.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA03G03250.1 (Glycine max), 5'ss of exon 10
CGAGTTGCGGTATTACATCTAGAAGAAAGGTGTGAACGAGCAATTGAATGGGCATTAAAGATTGAGCCTTCCATAAAACATTTGgtgagtggtgacatgaactgcagtttcccaactttttcaccacacctcattcagcacatccttttgtctgcttctttggactgtattattttggagtctgccatacccatcattgtgttctgccttctctag
||| |||| || |||||||| || || |||||||||||||||||  | |||||||| ||||| ||||||||||||| ||| ||||| | | |  |  | || |           |||       || |   ||| ||  || ||||  | | |  |  |||  | || |  || |       || ||| |      |||| |  |||         
CGAATTGCTGTGTTACATCTTGAGGAGAGGTGTGAACGAGCAATACAGTGGGCATTGAAGATGGAGCCTTCCATAAGACACTTGgtaatttgaaatctaaatt-----------actgccatgtcaaataacat-caatac-tcctcctatatattaatttccattgaaaaatctaaa----tgtcattctatgtcttgtttgttgcag-------

upper sequence: Vv15s0048g00390.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA01G33720.1 (Glycine max), 5'ss of exon 12
CGAGTTGCGGTATTACATCTAGAAGAAAGGTGTGAACGAGCAATTGAATGGGCATTAAAGATTGAGCCTTCCATAAAACATTTGgtgagtggtgacatgaactgcagtttcccaactttttcaccacacctcattcagcacatccttttgtctgcttctttggactgtattattttggagtctgccatacccatcattgtgttctgccttctctag
||| |||| || |||||||| || ||||||||||||||||||||    |||||||| ||||| ||||||||||||| ||| ||||| | | |  |  | || ||| |        | || |||    || |||        || ||  | ||   |  |||  | || |  || |       || ||| | |    ||||  | |||         
CGAATTGCTGTGTTACATCTTGAGGAAAGGTGTGAACGAGCAATACTGTGGGCATTTAAGATGGAGCCTTCCATAAGACACTTGgtaatttgaaatctaaattgctg--------ccttgtcaaataacatca--------atgctcctatccattaatttccattgaaaaatctaaa----tgtcattctctgtcttgttatttgcag-------