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GGTCATTCTCCTGACCAATTCAAGATTGTGATGCCCAAAATTCCTGCATATTTCACGgtatgcatattcttccttattcctcccacttgtgggacttttatggttgtttctatgggatggcaagatcttatttatatattaaaattacctttttttg...
species | Vitis vinifera |
transcript | Vv14s0006g01660.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTCCTGACCAATTCAAGATTGTGATGCCCAAAATTCCTGCATATTTCACG GGAACAGGAGATCTAATGACTGCACTTTTACTTGGATGGAGCAATEST: gi|110414186|gb|EC980012.1|EC980012
genomic: CTCCTGACCAATTCAAGATTGTGATGCCCAAAATTCCTGCATATTTCACGgtatgcatat ... atacctgtagGGAACAGGAGATCTAATGACTGCACTTTTACTTGGATGGAGCAAT
EST: CTCCTGACCAATTCAAGATTGTGATGCCCAAAATTCCTGCATATTTCACG GGAACAGGAGATCTAATGACTGCACTTTTACTTGGATGGAGCAATEST: gi|46918151|gb|CN547480.1|CN547480
genomic: CTCCTGACCAATTCAAGATTGTGATGCCCAAAATTCCTGCATATTTCACGgtatgcatat ... atacctgtagGGAACAGGAGATCTAATGACTGCACTTTTACTTGGATGGAGCAAT
EST: TGACCAATTCAAGATTGTGATGCCCAAAATTCCTGCATATTTCACG GGAACAGGAGATCTAATGACTGCACTTTTACTTGGATGGAGCAATEST: gi|18458843|gb|BM437121.1|BM437121
genomic: TGACCAATTCAAGATTGTGATGCCCAAAATTCCTGCATATTTCACGgtatgcatat ... atacctgtagGGAACAGGAGATCTAATGACTGCACTTTTACTTGGATGGAGCAAT
EST: CTCCTGACCAATTCAAGATTGTGATGCCCAAAATTCCTGCATATTTCACG GGAACAGGAGATCTAATGACTGCACTTTTACTTGGATGGAGCAAT
genomic: CTCCTGACCAATTCAAGATTGTGATGCCCAAAATTCCTGCATATTTCACGgtatgcatat ... atacctgtagGGAACAGGAGATCTAATGACTGCACTTTTACTTGGATGGAGCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCATTCTCCTGACCAATTCAAGATTGTGATGCCCAAAATTCCTGCATATTTCACGgtatgcatattcttccttattcctcccacttgtgggacttttatggttgtttctatgggatggcaagatcttatttatatattaaaattacctttttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attaaaa