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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCATCAACAGATATTGTCTGCCCCATGTATATGCGTGTTTGGGACATTGTAAAGATTGCAAAAGATCCAACTGAAATGCGACCTTTGATTCTATGCGAgtatgttcctttttcagtttttgatttacaaaaatgttgtaatgtacccaaattcaatccttttgacaatgccaattgatttgcataaatatacttataaaaatgttcaactgtcag

Basic information

species Vitis vinifera
transcript Vv13s0067g03000.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03000.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G032496_T01 (Zea mays), 5'ss of exon 3
CTCCATCAACAGATATTGTCTGCCCCATGTATATGCGTGTTTGGGACATTGTAAAGATTGCAAAAGATCCAACTGAAATGCGACCTTTGATTCTATGCGAgtatgttcctttttcagtttttgatttacaaaaatgttgtaatgtacccaaattcaatccttttgacaatgccaattgatttgcataaatatacttataaaaatgttcaactgtcag
|  |||| ||||||||||| |||||||||||||||||||| |||||  |||| ||||| |||||||||||| ||||||   | ||| | ||||| |||||||||| |        |    |    | ||| |    |     | || ||  |||||     |||||  |    | ||  ||| | |     | |||  ||                 
CATCATCCACAGATATTGTGTGCCCCATGTATATGCGTGTCTGGGATGTTGTTAAGATAGCAAAAGATCCATCTGAAACAAGGCCTCTAATTCTTTGCGAgtatgct--------aagcatgacctcacatattaataaccctttatccgtattcatatgatttgatgaaagaactt--tttccttt----tgctttcaag----------------

upper sequence: Vv13s0067g03000.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA13G26700.1 (Glycine max), 5'ss of exon 10
CTCCATCAACAGATATTGTCTGCCCCATGTATATGCGTGTTTGGGACATTGTAAAGATTGCAAAAGATCCAACTGAAATGCGACCTTTGATTCTATGCGAgtatgttcctttttcagtttttgatttacaaaaatgttgtaatgtacccaaattcaatccttttgacaatgccaattgatttgcataaatatacttataaaaatgttcaac-----tgtcag
|||| |  || |||||||| || || ||||||||||||||||||||||| || || || || || |||||||||||||  || ||| |||| || |||||||||| |   |||  ||||||  ||  |||| | |  | | |  |   |   |||  |  | || ||| ||  |  | |||   |||| | |  |  |    |||| ||||     || |||
CTCCGTGCACTGATATTGTGTGTCCTATGTATATGCGTGTTTGGGACATGGTGAAAATAGCCAATGATCCAACTGAAACACGTCCTCTGATACTGTGCGAgtatgat---tttgtagttttacatcaacaaca-taatatgacttctactg-ttccctgttgtttacagtgatagataatt-atataatttttttatttgttatgtccaacccaaatggcag

upper sequence: Vv13s0067g03000.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA15G37670.1 (Glycine max), 5'ss of exon 5
CTCCATCAACAGATATTGTCTGCCCCATGTATATGCGTGTTTGGGACATTGTAAAGATTGCAAAAGATCCAACTGAAATGCGACCTTTGATTCTATGCGAgtatgttcctttttcagtttttgatttacaaaaatgt-tgtaatgtacccaaattcaatccttttgacaatgccaattgatttgcataaatatacttataaaaat--gttcaactgtcag
||||||  || |||||||| || || ||||||||||||||||||||||| || || ||| | || |||||||||||||  || ||| |||| || |||||||||| |    ||  ||||||  ||  |||| |   | ||   | ||||        ||  |   |  |  |  ||||   |    |   | || || | |         ||| || |||
CTCCATGCACTGATATTGTGTGTCCTATGTATATGCGTGTTTGGGACATGGTGAAAATTTCCAATGATCCAACTGAAACACGTCCTCTGATACTGTGCGAgtatgat----ttgtagttttacatcaacaacataatatgacttctaccgttccctgattttacagtgatagataattatataatttttttttatttgtgatgtccaacccaaatggcag

upper sequence: Vv13s0067g03000.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G54440.3 (Arabidopsis thaliana), 5'ss of exon 10
CTCCATCAACAGATATTGTCTGCCCCATGTATATGCGTGTTTGGGACATTGTAAAGATTGCAAAAGATCCAACTGAAATGCGACCTTTGATTCTATGCGAgtatgttc------ctttttcagtttt--tgatttacaaaaatgttgtaatgtacccaaattcaatcctt--ttgacaatgccaattgatttgcataaatatacttataaaaatgttcaactgtcag-------
|    || |||||||| |||||||| ||||| ||||| |||||||||||  | |||||||||   |||| || ||||   || || |||||  ||||||||||||||        || |||| ||||  ||| || ||    ||   | || ||  | |||| | | | |  |||   |       || ||    |   | |||||   | | | |     |   |        
CAAGTTCTACAGATATAGTCTGCCCTATGTACATGCGGGTTTGGGACATCATCAAGATTGCACTTGATCAAAATGAATCACGGCCGTTGATATTATGCGAgtatgttagatcaatttcttcatttttcctgaattgcatt--tggcatcatataggccaatttattgcatcattgtttagatttcatgtttcttttgtgtctacttgagagattttcttcttaataaaacacag

upper sequence: Vv13s0067g03000.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: EFJ13378 (Selaginella moellendorffii), 5'ss of exon 10
CTCCATCAACAGATATTGTCTGCCCCATGTATATGCGTGTTTGGGACATTGTAAAGATTGCAAAAGATCCAACTGAAATGCGACCTTTGATTCTATGCGAgtatgttcctttttcagtttttgatttacaaaaatgttgtaatgtacccaaattcaatccttttgacaatgccaattgatttgcataaatatacttataaaaatgttcaactgtcag
|  |  |||| |||||  | |||||||||||||||||||| |||||||  || |||||||| || ||  |  ||||| | || ||| | |||||||||||||| |  | ||||  | ||||   ||||   |||   |  ||          ||| |                                                            
CGTCTGCAACGGATATAATATGCCCCATGTATATGCGTGTCTGGGACACAGTGAAGATTGCGAACGACACTTCTGAACTTCGGCCTGTTATTCTATGCGAgtaag--ctttttataattttgtttttattgaaagactcgaaaac-tttgggttctacag---------------------------------------------------------