Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGAAGAATATTCTTCCTATACTACTTCAAAAGAGAGTCGTCCATTTTGTTGGATTTGGAAATCGTTTGGCATTTGACCCAATACCATTTGAGTTGCAGgtaaatctatagtctttgatatattattccggcaaagtctttggaggagctaatagcataggtttatgagattatcaacctcgcttggttttcttagtttttatattgctttcctaattgcgggacttcatctag

Basic information

species Vitis vinifera
transcript Vv10s0116g00130.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00130.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA17G01390.1 (Glycine max), 5'ss of exon 5
TCGGAAGAATATTCTTCCTATACTACTTCAAAAGAGAGTCGTCCATTTTGTTGGATTTGGAAATCGTTTGGCATTTGACCCAATACCATTTGAGTTGCAGgtaaatctatagtctttgatatattattccggcaaagtctttggaggagctaatagcataggtttatgagattat-caacctcgcttggttttcttagtttttatattgctttcctaattgcgggacttcatctag
    ||  | ||  | |||||  || || ||||   ||| || || |||||||||||||| |||||  |||||||||| |||||| |||||||  ||||||||||| |    |||||||   || | |     | |   |||  | || || ||  | |    |  |  | || | |   ||  |||| | |    ||  ||  |||    |||||||||| || ||||||| |||
CTTAAAACACATCTTACCTATTATAATTAAAAATCAAGTTGTTCACTTTGTTGGATTTGGTAATCGCCTGGCATTTGATCCAATAGCATTTGAACTGCAGgtaaatgt----tctttgaagcataaatttacaatataattttcatgatctcatgcccttcaatgctctgtttttactgtctttcttgatctga--agccttactatgctcttcctaattggggaacttcatatag

upper sequence: Vv10s0116g00130.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA07G39330.1 (Glycine max), 5'ss of exon 4
TCGGAAGAATATTCTTCCTATACTACTTCAAAAGAGAGTCGTCCATTTTGTTGGATTTGGAAATCGTTTGGCATTTGACCCAATACCATTTGAGTTGCAGgtaaatctatagtctttgatatattattccggcaaagtctttggaggagct-aatagcataggtttatgagattatcaacctcgcttggttttcttagtttttatattgctttcctaattgcgggacttcatctag
   |||  | ||  | |||||  ||||| ||||   ||| || || |||||||||||||| |||||  |||| ||||| |||||| |||||||| ||||||||||| |    |||||||   || | |     | |   |||  | || || ||   | |   | |      ||  |   ||  |||| | |    ||  ||  |||    |||||||||| || ||||||| |||
CTTGAAACACATCTTACCTATTATACTTAAAAATCAAGTTGTTCACTTTGTTGGATTTGGTAATCGCCTGGCTTTTGATCCAATAGCATTTGAGCTGCAGgtaaatgt----tctttgaagcataaatttacaatatgattttcatgatctcaagcccttcaatgttctgtttttactgtctttcttgatctga--agccttactatgctcttcctaattggggaacttcatatag

upper sequence: Vv10s0116g00130.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G62330.1 (Arabidopsis thaliana), 5'ss of exon 7
TCGGAAGAATATTCTTCCTATACTACTTCAAAAGAGAGTCGTCCATTTTGTTGGATTTGGAAATCGTTTGGCATTTGACCCAATACCATTTGAGTTGCAGgtaaatctatagtctttgatatatt--attccggcaaagtctttggaggagctaatagcataggtttatgagattatcaacctcgcttggttttcttagtttttatattgctttcctaattgcgggacttcatctag
|  |||| | ||||||||| | |||||  |||| ||||||||||||||  | ||||| ||||| |||||||| |||||||| ||||| |||||||| ||||||||         |||   |   |  ||  ||  | | |    | |         | | |    ||  |   |                                                               
TATGAAGCACATTCTTCCTCTTCTACTCAAAAACAGAGTCGTCCATTTCTTAGGATTCGGAAACCGTTTGGCCTTTGACCCGATACCGTTTGAGTTACAGgtaaagaaccttcttttagcaccgtggatatcgatatattacccgtaatgatc--caactttttcttggggagtag-------------------------------------------------------------

upper sequence: Vv10s0116g00130.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G11990.1 (Arabidopsis thaliana), 5'ss of exon 7
TCGGAAGAATATTCTTCCTATACTACTTCAAAAGAGAGTCGTCCATTTTGTTGGATTTGGAAATCGTTTGGCATTTGACCCAATACCATTTGAGTTGCAGgtaaatctatagtctttgatatattattccggcaaagtct--ttggaggagctaatagcataggtttatgagattatcaacctcgcttggttttcttagtttttatattgctttcctaattgcgggacttcatctag
|  ||   | ||||| |||||||||||  | || |||||  |||||||||| ||||| ||||| || || || ||||| ||| |||| |||||||| |||||| |  | |  | |    ||     |||     |  |||  ||  ||   ||      | |  ||| ||  | ||                                                             
TATGACACACATTCTCCCTATACTACTCAAGAACAGAGTAATCCATTTTGTCGGATTCGGAAACCGCTTAGCCTTTGATCCATTACCGTTTGAGTTACAGgtagacattttttttactctacgcgcttctatatatctctgattatagcttctttatctaaacctttttggaagtag------------------------------------------------------------