Sequence
atgc intronic sequence ATGC exonic sequenceGTTTCCGCTGCCCTTCATGATAACTGTAGAGCTGTTCTTGTGGGGCAAAGGACTTTTGGCAAGgttagaatatctgctcatcccagctaacaattccaaaccagttctgtagcgattctgaatttttaatgaatttgatactaagctgaataccattgacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g02730.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA05G29820.1 (Glycine max), 5'ss of exon 11
GTTTCCGCTGCCCTTCATGATAACTGTAGAGCTGTTCTTGTGGGGCAAAGGACTTTTGGCAAGgtta--gaatatctgctcatcccagctaacaattccaaaccagttctgtagcgattctgaatttttaat----gaatttgatactaagctgaataccattgacag
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GTTGCTTCTGCACTTCATGATAATTGTAGAGCTGTTCTTGTTGGAAAACGCACATATGGCAAGgtttatgaatattttc-catcactgctgtatggtttaaacaatgtagactttgatctgcattctttgttctgaaaaccccatgtccatctgaaagcgtttt----
upper sequence: Vv10s0003g02730.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA05G29820.2 (Glycine max), 5'ss of exon 10
-------------------------------------GTTTCCGCTGCCCTTCATGATAACTGTAGAGCTGTTCTTGTGGGGCAAAGGACTTTTGGCAAGgtta--gaatatctgctcatcccagctaacaattccaaaccagttctgtagcgattctgaatttttaat----gaatttgatactaagctgaataccattgacag
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TTTGATGATGTGACTATAGGTGTTGTACTTATTTCAGGTTGCTTCTGCACTTCATGATAATTGTAGAGCTGTTCTTGTTGGAAAACGCACATATGGCAAGgtttatgaatattttc-catcactgctgtatggtttaaacaatgtagactttgatctgcattctttgttctgaaaaccccatgtccatctgaaagcgtttt----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110364067|gb|EC927709.1|EC927709EST: TTCATGATAACTGTAGAGCTGTTCTTGTGGGGCAAAGGACTTTTGGCAAG GGTCTGATACAATCTGTATTTGAACTTCATGATGGATCTGGTGTGGTTGTC
genomic: TTCATGATAACTGTAGAGCTGTTCTTGTGGGGCAAAGGACTTTTGGCAAGgttagaatat ... ccattgacagGGTCTGATACAATCTGTATTTGAACTTCATGATGGATCTGGTGTGGTTGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTCCGCTGCCCTTCATGATAACTGTAGAGCTGTTCTTGTGGGGCAAAGGACTTTTGGCAAGgttagaatatctgctcatcccagctaacaattccaaaccagttctgtagcgattctgaatttttaatgaatttgatactaagctgaataccattgacag
- - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - GCAAAG