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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTATGCCTGTTGAAAAATATCTTGATATTTTGGGTACATGTAGGCGAAAGCTTTTTGATGTCAGATTGAATCGTCCAAGACCGCATTTGGATGATAAGgtaacatcttaaacaaccatcttttctgaagaacttacctgatactcaaccttcctcttacctgtcatgcacattttaaagatcaggtgcttgctag

Basic information

species Vitis vinifera
transcript Vv07s0104g01480.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0104g01480.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT4G03200.2 (Arabidopsis thaliana), 5'ss of exon 8
TGGTATGCCTGTTGAAAAATATCTTGATATTTTGGGTACATGTAGGCGAAAGCTTTTTGATGTCAGATTGAATCGTCCAAGACCGCATTTGGATGATAAGgtaacatcttaaacaaccatcttttctgaagaacttacctgatactcaaccttcctcttacctgtcatgcacattttaaagatcaggtgcttgctag
| |  |  ||||||| || ||||  || || || |||  |||  |  |||||||||| |||||||||||||| || || |  |||||| | ||||||||||||| |   |         |||  | |      ||   ||| | ||  |  ||  |    | | | |      ||| | ||                
TAGCCTCTCTGTTGAGAAGTATCAGGAGATATTAGGTGAATGCCGAAGAAAGCTTTTCGATGTCAGATTGAAGCGACCTAAGCCGCATCTAGATGATAAGgtaatactcttcttggaattctcatgttgtcttctctactgtttcttcagatttgttaaccatttaagatttctttcatag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30254986|gb|CB971433.1|CB971433
EST:     AGCTTTTTGATGTCAGATTGAATCGTCCAAGACCGCATTTGGATGATAAG                         GTAATTGTATCATGGAATGGACTTGCTATTTCATCTTTTGCAAGAGCT
genomic: AGCTTTTTGATGTCAGATTGAATCGTCCAAGACCGCATTTGGATGATAAGgtaacatctt ... tgcttgctagGTAATTGTATCATGGAATGGACTTGCTATTTCATCTTTTGCAAGAGCT