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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATATGGGTGAACAGTTTGGAGTTAAGCTTTCTCGAGAAGATGCGGAAAAAGCCCAACAAGCCCTCTCATCTATAACACCTGAGAACTTGGATAGAATGgtaccttctagttcatattcactttctttacatgattcatttcatttgagtgacgtaattctttgtgacagctaccttacaaatgtttttatgtatagaa...

Basic information

species Vitis vinifera
transcript Vv06s0009g01020.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g01020.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA06G46490.1 (Glycine max), 5'ss of exon 10
AAATATGGGTGAACAGTTTGGAGTTAAGCTTTCTCGAGAAGATGCGGAAAAAGCCCAACAAGCCCTCTCATCTATAACACCTGAGAACTTGGATAGAATGgtaccttctagttcatattcactttctttacatgattcat-ttcatttgagtgacgtaattcttt--gtgacagctaccttacaaatgtttt-tatgtatagaa
 || ||||||||||| ||||| ||||||||||| | || ||| || | |||||| || |||||| | |||||  || |||| |||| |||||||| |||||||||||||     |  || ||  | | | | |  ||  | |||||       |  |  | | ||   |||          |   | || |   |  |  ||  
TAACATGGGTGAACAATTTGGTGTTAAGCTTTCACCAGGAGAAGCTGCAAAAGCTCATCAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATGgtaccttct--ccaaactttacaatatattcttagtttgtattcatgaacaaaattttgtaccttacatgaggatggtaaaatggaggtgtggcaattccag--

upper sequence: Vv06s0009g01020.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA12G10270.2 (Glycine max), 5'ss of exon 10
AAATATGGGTGAACAGTTTGGAGTTAAGCTTTCTCGAGAAGATGCGGAAAAAGCCCAACAAGCCCTCTCATCTATAACACCTGAGAACTTGGATAGAATGgtaccttctagttcatattc------actttctt------tacatga----ttcatttcatttgagtgacgtaattctttgtgacagctaccttacaaatgtttttatgtatagaa----------------------------------------------------------------
 || ||||||||||| ||||| ||||||||||| | |||||| || | |||||| || |||||| | |||||  || |||| |||| |||||||| ||||||| |||||  | || | ||      |  |||||      || |  |    || |  | |  ||||    ||||      |     || |   ||  ||   |    |  ||| |                                                                 
TAACATGGGTGAACAATTTGGTGTTAAGCTTTCACCAGAAGAAGCTGCAAAAGCTCAGCAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATGgtatcttcttctccaaactctacaatatattcttagtttgtaaacaaaaattttaccttagatgaggatggtaaaataaaggtgtggcaattctaggaaatatagggtagataaacttaggttggatggttatagacttgtacagtagtactaagatgaatcttttcactgtctttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352777554|gb|FQ466607.1|FQ466607
EST:     AAGCCCAACAAGCCCTCTCATCTATAACACCTGAGAACTTGGATAGAATG                         ATGCGTTGGGCTGATGGGATTCAAAAAGGAGCCGAACGAGCCAGGAAGGCA
genomic: AAGCCCAACAAGCCCTCTCATCTATAACACCTGAGAACTTGGATAGAATGgtaccttcta ... attgttgcagATGCGTTGGGCTGATGGGATTCAAAAAGGAGCCGAACGAGCCAGGAAGGCA