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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGAGTGTGGTGGACAAGAATTTGCAGAAATCAATTGTACAGAATGATGAAGAATATCTGGATTCTGCTCTTCCAGTGACACCATTGCGCACTTGCAGgtttgattctctcaaacaatttttggccaatgaagttgacagtcattattatgattttctaaaaggacattttgtatgccag

Basic information

species Vitis vinifera
transcript Vv05s0020g03880.t01
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110702530|gb|EE081350.1|EE081350
EST:     GAAGAATATCTGGATTCTGCTCTTCCAGTGACACCATTGCGCACTTGCAG                         ACAACCATCTCAATTGTCATTTCCCTCAAAGACCAAACTACCACGATCGTC
genomic: GAAGAATATCTGGATTCTGCTCTTCCAGTGACACCATTGCGCACTTGCAGgtttgattct ... tgtatgccagACAACCATCTCAATTGTCATTTCCCTCAAAGACCAAACTACCACGATCGTC
EST: gi|110414532|gb|EC980366.1|EC980366
EST:     GAAGAATATCTGGATTCTGCTCTTCCAGTGACACCATTGCGCACTTGCAG                         GCAATCATCTCAATTGTCATTTCCCTCAAAGACCAAACTACCACGATCGTC
genomic: GAAGAATATCTGGATTCTGCTCTTCCAGTGACACCATTGCGCACTTGCAGgtttgattct ... tgtatgccagACAACCATCTCAATTGTCATTTCCCTCAAAGACCAAACTACCACGATCGTC
EST: gi|110725686|gb|EE102471.1|EE102471
EST:     GAAGAATATCTGGATTCTGCTCTTCCAGTGACACCATTGCGCACTTGCAG                         ACAACCATCTCAATTGTCATTTCCCTCAAAGACCAAACTACCACGATCGTC
genomic: GAAGAATATCTGGATTCTGCTCTTCCAGTGACACCATTGCGCACTTGCAGgtttgattct ... tgtatgccagACAACCATCTCAATTGTCATTTCCCTCAAAGACCAAACTACCACGATCGTC
EST: gi|71877208|gb|DT026263.1|DT026263
EST:     GAAGAATATCTGGATTCTGCTCTTCCAGTGACACCATTGCGCACTTGCAG                         ACAACCATCTCAATTGTCATTTCCCTCAAAGACCAAACTACCACGATCGTC
genomic: GAAGAATATCTGGATTCTGCTCTTCCAGTGACACCATTGCGCACTTGCAGgtttgattct ... tgtatgccagACAACCATCTCAATTGTCATTTCCCTCAAAGACCAAACTACCACGATCGTC
EST: gi|71866287|gb|DT015342.1|DT015342
EST:     GAAGAATATCTGGATTCTGCTCTTCCAGTGACACCATTGCGCACTTGCAG                         ACAACCATCTCAATTGTCATTTCCCTCAAAGACCAAACTACCACGATCGTC
genomic: GAAGAATATCTGGATTCTGCTCTTCCAGTGACACCATTGCGCACTTGCAGgtttgattct ... tgtatgccagACAACCATCTCAATTGTCATTTCCCTCAAAGACCAAACTACCACGATCGTC
EST: gi|351044072|gb|FQ452745.1|FQ452745
EST:     GAAGAATATCTGGATTCTGCTCTTCCAGTGACACCATTGCGCACTTGCAG                         GCAATCATCTCAATTGTCATTTCCCTCAAAGACCAAACTACCACGATCGTC
genomic: GAAGAATATCTGGATTCTGCTCTTCCAGTGACACCATTGCGCACTTGCAGgtttgattct ... tgtatgccagACAACCATCTCAATTGTCATTTCCCTCAAAGACCAAACTACCACGATCGTC