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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCAGTGCCCTGAATGCAGCTGCAAAAACACATGGGGTAGCTACGAGTGCACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaacaaccagagttctataacctatcaaacaaaaaaacaaccagacttctgtaaatgtctgtttgcacacaaataatatacttcccctccatggtcatgtgcag

Basic information

species Vitis vinifera
transcript Vv03s0091g00740.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 10
TGTCAGTGCCCTGAATGCAGCTGCAAAAACACATGGGGTAGCTACGAGTGCACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagtt--aaacaaccagagttctataacctatcaaacaaaaaaacaaccagacttctgtaaatgtctg-tttgcacacaaataatatacttcccctccatggtcatgtgcag
|||||||| |||||||||| ||||||| | ||||||||| |||| || |||||||||||||| || |||||||| ||||| || ||||| |||||||||||| | ||  ||   | | ||   || |  | ||||    |    | |||       | | ||||||  |  | ||||                                     
TGTCAGTGTCCTGAATGCAACTGCAAAGATACATGGGGTGGCTATGACTGCACTTGCAGTGGTGACCTTTTGTACATCAGAGAGCATGACACCTGCATAAgtaatttccaactcaactgatagcttttgcttatcct-tagtgtatcaattgagtatatataaatggttaatctgcag------------------------------------

upper sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA20G27000.1 (Glycine max), 5'ss of exon 10
TGTCAGTGCCCTGAATGCAGCTGCAAAAACACATGGGGTAGCTACGAGTGCACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaaca-accaga-gttctataacctatcaaacaaaaaaacaaccagacttctgtaaatgtctgtttgcacacaaataatatacttcccctccatggtcatgtgcag
||||||||||||||||| |||||||| || || ||||| ||||| || ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| | ||  ||  | || | || |      ||    ||   |  |  |||        | | ||| ||      ||   | |                       
TGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGAAGCTATGACTGCACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGATACTTGCATAAgtgagttaaatacacttgatatccttttacttgcatggcatttgaattgcttggtttc-------atttatttccaactgggtatcctgcag---------------------

upper sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G40340.1 (Glycine max), 5'ss of exon 10
TGTCAGTGCCCTGAATGCAGCTGCAAAAACACATGGGGTAGCTACGAGTGCACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaa----acaaccagagttctataacctatcaaacaaaaaaacaaccagacttctgtaaatgtctgtttgcacacaaataatatacttcccctccatggtcatgtgcag
||||||||||||||||| |||||||| || || ||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||      ||       |||| | || |      ||    ||   |  |  |||  | | |  ||  | | |  |                                  
TGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGAAGCTATGACTGCACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttattaatgcacttgatattcttttacttgcatggcatttgaattgcttggtttcatttatttcctactggtattctgcag-----------------------------

upper sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA11G00370.1 (Glycine max), 5'ss of exon 10
TGTCAGTGCCCTGAATGCAGCTGCAAAAACACATGGGGTAGCTACGAGTGCACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaacaaccagagttctataacctatcaaacaaaaaaacaaccagacttctgtaaatgtctgtttgcacacaaataatatacttcccctccatggtcatgtgcag
||||||||||||||||| |||||||| || || ||||| ||||| || |||| ||| ||||| |||||| ||||||| |||||||| |||||||||||||||||||| || |  ||    | | ||     ||  |||     | |    |  |  | |||| |  ||||| ||               ||| || |  | | |  | |||
TGTCAGTGCCCTGAATGTAGCTGCAAGAATACGTGGGGAAGCTATGACTGCAGTTGTAGTGGAGATCTTCTGTATATGAGGGACCACGATACCTGCATAAgtgagttgaatatgcaagactttttacttgctcctacatttgcatat---gtttgttataaaggcttgttttcatg-------------tcctctactggattacctacag

upper sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA01G45380.1 (Glycine max), 5'ss of exon 10
TGTCAGTGCCCTGAATGCAGCTGCAAAAACACATGGGGTAGCTACGAGTGCACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaacaaccagagttctataacctatcaaacaaaaaaacaaccagacttctgtaaatgtctgtttgcacacaaataatatacttcccctccatggtcatgtgcag
|||||||||||||| || |||||||| || || ||||| ||||| || |||| ||| ||||| |||||| ||||||| |||||||| |||||||||||||||||||| || |  ||    | | ||     ||  |||     | |    |  |  | |||  |  ||||| ||  |     |     || ||  |               
TGTCAGTGCCCTGACTGTAGCTGCAAGAATACTTGGGGAAGCTATGACTGCAGTTGTAGTGGAGATCTTCTGTATATGAGGGACCACGATACCTGCATAAgtgagttgaatatgcaagactttttacttgctcctacattttcatat---gtttgttataag-gcttgttttcatgccctctactggattacctacag-------------

upper sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT2G14740.1 (Arabidopsis thaliana), 5'ss of exon 10
TGTCAGTGCCCTGAATGCAGCTGCAAAAACACATGGGGTAGCTACGAGTGCACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaacaaccagagttctataacctatcaaacaaaaaaacaaccagacttctgtaaatgtctgtttgcacacaaataatatacttcccctccatggtcatgtgcag
|| |||||||| || || |||||||| ||||||||||| ||||| |||||| |||| || ||||| ||| | || ||||| || ||||| || ||||| |||||||          || |     |  |||       |  |  |||  ||  ||      |   |||||| |   ||| |  |||   | |  |   | |  || |    
TGCCAGTGCCCAGAGTGTAGCTGCAAGAACACATGGGGAAGCTATGAGTGCTCTTGTAGCGGGGACCTTCTCTACATCAGAGATCATGACACTTGCATCAgtgagtatttttttttgaatatggaagtctaaagtttgattattcaaatagtgtttctcccac--ctgttttc---caattgttattggttctatttgtcgaaatctag--

upper sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT2G14720.1 (Arabidopsis thaliana), 5'ss of exon 10
TGTCAGTGCCCTGAATGCAGCTGCAAAAACACATGGGGTAGCTACGAGTGCACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagtt------------aaacaaccagagttctataacc---------------tatcaaacaaaaaaacaac-cagacttctgtaaatgtctgtttgcacacaaataatatacttcccctccatggtcatgtgcag------------------------
||||||||||| ||||| ||||| || ||||| ||||| ||||| |||||| |||| || ||||| ||| | || || || |||||||| || ||||| ||||||||            | |   | ||| ||||||||                 | ||| |||  |||| |   |   |   |  ||||  |  | || |   | | ||  | ||  | |||  |  |||  || |                         
TGTCAGTGCCCGGAATGTAGCTGTAAGAACACCTGGGGAAGCTATGAGTGCTCTTGTAGCGGGGACCTTCTCTACATGAGAGACCATGACACTTGCATCAgtgagttttcatcatcttaagatttctagatttctataaatatgcatgtacgagtatgtcacacacgaaaagagtactcgcgcatacaaatagcc-tctgaatttagaaaa-gttctctctctcttta-tcaactgaaattggttcttttgtctggaatttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|45770726|gb|CN006578.1|CN006578
EST:     CACTTGCAGTGGGGATCTTTTGTACATCAGGGACCATGATACCTGCATAA                         GTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
genomic: CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaa ... tcatgtgcagGTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
EST: gi|71888433|gb|DT037488.1|DT037488
EST:     CACTTGCAGTGGGGATCTTTTGTACATCAGGGACCATGATACCTGCATAA                         GTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
genomic: CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaa ... tcatgtgcagGTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
EST: gi|110363399|gb|EC926982.1|EC926982
EST:     CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAA                         GTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
genomic: CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaa ... tcatgtgcagGTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
EST: gi|110359067|gb|EC919937.1|EC919937
EST:     CACTTGCAGTGGGGATCTTTTGTACATCAGGGACCATGATACCTGCATAA                         GTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
genomic: CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaa ... tcatgtgcagGTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
EST: gi|110383781|gb|EC948181.1|EC948181
EST:     CACTTGCAGTGGGGATCTTTTGTACATCAGGGACCATGATACCTGCATAA                         GTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
genomic: CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaa ... tcatgtgcagGTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
EST: gi|110384097|gb|EC948513.1|EC948513
EST:     CTTTTGTACATCAGGGACCATGATACCTGCATAA                         GTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
genomic: CTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaa ... tcatgtgcagGTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
EST: gi|110718216|gb|EE094793.1|EE094793
EST:     CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAA                         GTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
genomic: CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaa ... tcatgtgcagGTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
EST: gi|349830520|gb|FQ416830.1|FQ416830
EST:     CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAA                         GTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
genomic: CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaa ... tcatgtgcagGTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
EST: gi|26262131|gb|CA813194.1|CA813194
EST:     CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAA                         GTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
genomic: CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaa ... tcatgtgcagGTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
EST: gi|30296650|gb|CB973444.1|CB973444
EST:     CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAA                         GTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
genomic: CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaa ... tcatgtgcagGTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
EST: gi|110692278|gb|EE071340.1|EE071340
EST:     CACTTGCAGTGGGGATCTTTTGTACATCAGGGACCATGATACCTGCATAA                         GTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
genomic: CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaa ... tcatgtgcagGTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
EST: gi|26263194|gb|CA814257.1|CA814257
EST:     ACTTGCCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAA                         GTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
genomic: ACTTG-CAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaa ... tcatgtgcagGTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
EST: gi|110403004|gb|EC964013.1|EC964013
EST:     CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAA                         GTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
genomic: CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaa ... tcatgtgcagGTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
EST: gi|30300932|gb|CB977726.1|CB977726
EST:     CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAA                         GTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
genomic: CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaa ... tcatgtgcagGTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
EST: gi|30296719|gb|CB973513.1|CB973513
EST:     CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAA                         GTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT
genomic: CACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagttaaa ... tcatgtgcagGTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTT