1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCTTTGCTGAACTATCAGCTGATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttcttatcctctccacaggaggaatccatgcttcataatgccttgattctacctctccctttagtgcctctcttcatgaatatccagagcgacc...
species | Vitis vinifera |
transcript | Vv00s0389g00020.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAA GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACAEST: gi|33403015|gb|CF208642.1|CF208642
genomic: GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
EST: GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAA GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACAEST: gi|110416873|gb|EC982881.1|EC982881
genomic: GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
EST: GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAA GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACAEST: gi|110403052|gb|EC964143.1|EC964143
genomic: GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
EST: GCACATTGCCAATTGATTGTTGTTTCCAA GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACAEST: gi|34548486|gb|CF516718.1|CF516718
genomic: GCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
EST: GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAA GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACAEST: gi|27579018|gb|CB001713.1|CB001713
genomic: GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
EST: GGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAA GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACAEST: gi|30252118|gb|CB968757.1|CB968757
genomic: GGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
EST: GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAA GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAGGGGGGTTAAACGACAEST: gi|27581522|gb|CB004217.1|CB004217
genomic: GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
EST: GGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAA GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACAEST: gi|27581734|gb|CB004429.1|CB004429
genomic: GGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
EST: GGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAA GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACAEST: gi|110389639|gb|EC954494.1|EC954494
genomic: GGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
EST: GGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAA GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACAEST: gi|33402926|gb|CF208553.1|CF208553
genomic: GGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
EST: GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAA GTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
genomic: GATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttct ... tctctttaagGTTCATTGAGAAATTGCAAGAGGACATCCCTGGAAAGGGGGTTAAACGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTTGCTGAACTATCAGCTGATTTAGTGGAGGCGGCAGTTGCACATTGCCAATTGATTGTTGTTTCCAAgtaagcttcttatcctctccacaggaggaatccatgcttcataatgccttgattctacctctccctttagtgcctctcttcatgaatatccagagcgacc
- - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcttc