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AGCAAGCGCTCGAGCTTCCCAAAGCTGGATGCTATCAAAAGTGCTACTGCTGATATAgtgggtgatttttcctttcttaaataatatcataggcaattattaagaagcctggaactatggtttctttttaacatgcctaaatttttttctttgcaag...
species | Vitis vinifera |
transcript | Vv00s0250g00020.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CCAAAGCTGGATGCTATCAAAAGTGCTACTGCTGATATA CTTACAGACCTCAAAAAGCAGCCTGTTACTNTGAAATGGAAGGATAACAGTEST: gi|37188932|gb|CF608281.1|CF608281
genomic: CCAAAGCTGGATGCTATCAAAAGTGCTACTGCTGATATAgtgggtgatt ... ttatttaaagCTTACAGACCTCAAAAAGCAGCCTGTTACTTTGAAATGGAAGGATAACAGT
EST: GCTCGAGCTTCCCAAAGCTGGATGCTATCAAAAGTGCTACTGCTGATATA CTTACAGACCTCAAAAAGCAGCCTGTTACTTTGAAATGGAAGGATAACAGTEST: gi|30252735|gb|CB970286.1|CB970286
genomic: GCTCGAGCTTCCCAAAGCTGGATGCTATCAAAAGTGCTACTGCTGATATAgtgggtgatt ... ttatttaaagCTTACAGACCTCAAAAAGCAGCCTGTTACTTTGAAATGGAAGGATAACAGT
EST: GCTCGAGCTTCCCAAAGCTGGATGCTATCAAAAGTGCTACTGCTGATATA CTTACAGACCTCAAAAAGCAGCCTGTTACTTTGAAATGGAAGGATAACAGTEST: gi|110366419|gb|EC930325.1|EC930325
genomic: GCTCGAGCTTCCCAAAGCTGGATGCTATCAAAAGTGCTACTGCTGATATAgtgggtgatt ... ttatttaaagCTTACAGACCTCAAAAAGCAGCCTGTTACTTTGAAATGGAAGGATAACAGT
EST: GCTCGAGCTTCCCAAAGCTGGATGCTATCAAAAGTGCTACTGCTGATATA CTTACAGACCTCAAAAAGCAGCCTGTTACTTTGAAATGGAAGGATAACAGTEST: gi|110390476|gb|EC955386.1|EC955386
genomic: GCTCGAGCTTCCCAAAGCTGGATGCTATCAAAAGTGCTACTGCTGATATAgtgggtgatt ... ttatttaaagCTTACAGACCTCAAAAAGCAGCCTGTTACTTTGAAATGGAAGGATAACAGT
EST: GCTCGAGCTTCCCAAAGCTGGATGCTATCAAAAGTGCTACTGCTGATATA CTTACAGACCTCAAAAAGCAGCCTGTTACTTTGAAATGGAAGGATAACAGTEST: gi|27582920|gb|CB005615.1|CB005615
genomic: GCTCGAGCTTCCCAAAGCTGGATGCTATCAAAAGTGCTACTGCTGATATAgtgggtgatt ... ttatttaaagCTTACAGACCTCAAAAAGCAGCCTGTTACTTTGAAATGGAAGGATAACAGT
EST: GCTCGAGCTTCCCAAAGCTGGATGCTATCAAAAGTGCTACTGCTGATATA CTTACAGACCTCAAAAAGCAGCCTGTTACTTTGAAATGGAAGGATAACAGTEST: gi|110723499|gb|EE100881.1|EE100881
genomic: GCTCGAGCTTCCCAAAGCTGGATGCTATCAAAAGTGCTACTGCTGATATAgtgggtgatt ... ttatttaaagCTTACAGACCTCAAAAAGCAGCCTGTTACTTTGAAATGGAAGGATAACAGT
EST: GCTCGAGCTTCCCAAAGCTGGATGCTATCAAAAGTGCTACTGCTGATATA CTTACAGACCTC
genomic: GCTCGAGCTTCCCAAAGCTGGATGCTATCAAAAGTGCTACTGCTGATATAgtgggtgatt ... ttatttaaagCTTACAGACCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAAGCGCTCGAGCTTCCCAAAGCTGGATGCTATCAAAAGTGCTACTGCTGATATAgtgggtgatttttcctttcttaaataatatcataggcaattattaagaagcctggaactatggtttctttttaacatgcctaaatttttttctttgcaag
- - - - - GAGCTT
- - - - - - - - - - AAGCTG
- - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaagc