Sequence
atgc intronic sequence ATGC exonic sequenceGTCACGTGATGGTACCAAAGCTAGGTTGCCTATTGCTCATATGGTGTGCAATCAAACACCACCAGTGGGAAATAAACCAAGCCTTATGACATTCCGTGAGgtaaatggtaaacctaacacattgcttctatctcaagctgctttaatctctctctctctctctcttgtttttttctttgcttttctttttttttttttgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os02g58340.1 (Oryza sativa), 5'ss of exon 10
GTCACGTGATGGTACCAAAGCTAGGTTGCCTATTGCTCATATGGTGTGCAATCAAACACCACCAGTGGGAAATAAACCAAGCCTTATGACATTCCGTGAGgtaaatggtaa-acctaacacattgctt--ctatctcaagctg-ctttaatctctctctctctctctcttgtttttttctttgcttttctttttttttttttgt
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TGCTCGCAATGGTTCACCTGTCAGGCTTCCTGTTGCCCATATGGTGTGTAATCAGACCCCACCAGTTGGTGATAAACCCAGTCTTATGACCTTCCGTGAGgtaagcaataataaatatggcaatggtaaattattccagatagtctccaatgtatgagtat---tctgttacatcaatatgtggaaaactgtacactaaagta-
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G133919_T01 (Zea mays), 5'ss of exon 10
GTCACGTGATGGTACCAAAGCTAGGTTGCCTATTGCTCATATGGTGTGCAATCAAACACCACCAGTGGGAAATAAACCAAGCCTTATGACATTCCGTGAGgtaaatggtaaacctaacacattgcttc---------tatctcaagctgctttaatctctctctctctctctcttgtttttttctttgcttttctt--tttttttttttgt-------------
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AGCTCGCAATGGTTTGGCTGCTAGGCTGCCTGTTGCCCATATAGTGTGCAATCAGACTCCACCAGTTGGCGAGAAGCCCAGTCTCATGACCTTCCGTGAGgtaagtaatacatctgtgacatgtatgtgaataaggatatatggagaaagcagtagctctctgcctctccttattatggtactatgaagttgtgtaaattctttctgctgtatgttgcctgtag
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA09G33490.1 (Glycine max), 5'ss of exon 10
GTCACGTGATGGTACCAAAGCTAGGTTGCCTATTGCTCATATGGTGTGCAATCAAACACCACCAGTGGGAAATAAACCAAGCCTTATGACATTCCGTGAGgtaaatggtaaacctaacacattgcttctatctcaagctgctttaatctctctctctctctctcttgtttttttctttgcttttctttttttttttttgt-----
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ATCGCGCGATGGTACCTCAGCAAGATTGCCTGTTGCTCACATGGTGTGCAATCAAACTCCTCCAGTAGGAAACAAGCCAAGTCTAATGACATTCCGTGAGgtaacc--tcaattttacatgatgcatttgtct---attttataatttttgctatgatcattatctgttagataaaaaagagttgccaggctatttaagctaaat
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA01G02480.1 (Glycine max), 5'ss of exon 10
GTCACGTGATGGTACCAAAGCTAGGTTGCCTATTGCTCATATGGTGTGCAATCAAACACCACCAGTGGGAAATAAACCAAGCCTTATGACATTCCGTGAGgtaaatggtaaacctaacacattgcttctatctcaagctgctttaatctctctctctctctctcttgtttttttctttgcttttctttttttttttttgt-----
|| |||||||| ||| ||| || |||||| ||||||| ||||||||||||||||| || ||||| ||||| || ||||| || ||||||||||||||||||| | || | ||| || | | ||| | | | | | || | | |||| | |||| | | ||| |
ATCGCGTGATGGCACCTCAGCAAGATTGCCTGTTGCTCACATGGTGTGCAATCAAACTCCTCCAGTAGGAAACAAGCCAAGTCTAATGACATTCCGTGAGgtaacc--tcaattttacatgatgtatttgtct---attttataatttttgctatgatcattatctgttaagacaaaagagtttcctaggctatttaagctgaat
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT5G65620.1 (Arabidopsis thaliana), 5'ss of exon 10
GTCACGTGATGGTACCAAAGCTAGGTTGCCTATTGCTCATATGGTGTGCAATCAAACACCACCAGTGGGAAATAAACCAAGCCTTATGACATTCCGTGAGgtaaatggtaa---acctaacaca-ttgcttctatctcaagctgctttaatctctctctctctctctcttgtttttttctttgcttttctttttttttttttgt
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GGCTCAGAAAGGCTCTTCTGTTAGGCTGCCTGTTGCACACATGGTCTGCAACCAAACTCCACCAGTAGGTGACAAGCCAAGCCTTATGACATTCCGTGAGgtaaatgaaaaaacatccattgcacttgcacatatctaagcgtaacatgaaatctcaaaaatcctttcttgttgactataacatcactctgatttacag-----
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT5G10540.1 (Arabidopsis thaliana), 5'ss of exon 10
GTCACGTGATGGTACCAAAGCTAGGTTGCCTATTGCTCATATGGTGTGCAATCAAACACCACCAGTGGGAAATAAACCAAGCCTTATGACATTCCGTGAGgtaaatggtaaacctaacacattgcttctatctcaagctgctttaatctctctctctctctctc---ttgtttttttctttgcttttctttttttttttttgt
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GGCCCAGAAGGGTTCCTCCGTTAGACTCCCTGTTGCTCAAATGGTCTGCAACCAAACTCCACCTGTTGGTGACAAGCCAAGCCTTATGACATTCCGTGAGgtaaaaaata--tcttaaattctatattgattgtgaaggaagtaaatgcctgagtatgtatggtagttggtaacaaactatgagtacacatgcccccaaatg-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110732181|gb|EE107245.1|EE107245EST: ATCAAACACCACCAGTGGGAAATAAACCAAGCCTTATGACATTCCGTGAG GTTGAGACTGTTTTCCATGAATTTGGTCATGCACTTCAGCATATGCTTACC
genomic: ATCAAACACCACCAGTGGGAAATAAACCAAGCCTTATGACATTCCGTGAGgtaaatggta ... tgttttgcagGTTGAGACTGTTTTCCATGAATTTGGTCATGCACTTCAGCATATGCTTACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCACGTGATGGTACCAAAGCTAGGTTGCCTATTGCTCATATGGTGTGCAATCAAACACCACCAGTGGGAAATAAACCAAGCCTTATGACATTCCGTGAGgtaaatggtaaacctaacacattgcttctatctcaagctgctttaatctctctctctctctctcttgtttttttctttgcttttctttttttttttttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc